1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAGCTTGAGAGGCTTACCCGAGTTTTTACTCAGAAAATCCATGACTTGATTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcctttatgtatcatttcatgaaggactttcatgagaattagttatcaataaatatatgtttattctaatatggcctattttgtttgctttatggatgcag
species | Zea mays |
transcript | GRMZM2G178415_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAG ACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCTEST: gi|20300929|gb|BQ163872.1|BQ163872
genomic: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcc ... atggatgcagACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCT
EST: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAG ACAATGGCATGGATACTT-ACGAATACTCAAAGTTCCATGGTTACTCACCEST: gi|13125987|gb|BG316662.1|BG316662
genomic: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcc ... atggatgcagACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACC
EST: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAG ACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCTEST: gi|20301193|gb|BQ164136.1|BQ164136
genomic: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcc ... atggatgcagACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCT
EST: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAG ACAATGGCATGGATACTT-ACGAATACTCAAAGTTCCATGGTTACTCACCEST: gi|148934217|gb|EC878238.2|EC878238
genomic: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcc ... atggatgcagACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACC
EST: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAG ACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCTEST: gi|60357158|gb|DN224131.1|DN224131
genomic: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcc ... atggatgcagACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCT
EST: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAG ACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCT
genomic: TTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcc ... atggatgcagACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCTTGAGAGGCTTACCCGAGTTTTTACTCAGAAAATCCATGACTTGATTGGCATCCATACTGACGTTCCAGCTCCAGATATGGGCACCAACTCACAGgttattttcctttatgtatcatttcatgaaggactttcatgagaattagttatcaataaatatatgtttattctaatatggcctattttgtttgctttatggatgcag
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