1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCACTGGAAAAGCCCTCGTTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtgatagatacactgggcaaataaataaataaataaattacgacacatgttgagattagaaagctgtaactaactggaaagtccgcttgcttcttgggcgcgtcgttgcattgcag
species | Zea mays |
transcript | GRMZM2G178182_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|76280840|gb|DV020408.1|DV020408
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: ATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|78113320|gb|DV531712.1|DV531712
genomic: ATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|93013083|gb|EB638603.1|EB638603
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|78113319|gb|DV531711.1|DV531711
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|76914768|gb|DV165681.1|DV165681
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|76280841|gb|DV020409.1|DV020409
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|50330951|gb|CO526077.1|CO526077
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|71756803|gb|DR954740.1|DR954740
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGCEST: gi|71439158|gb|DR820208.1|DR820208
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
EST: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAG TTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
genomic: TTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtga ... tgcattgcagTTCCTTTCCATGAAGATCGCTTCACTGAGCCCTGTGCTGTATGGCTTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACTGGAAAAGCCCTCGTTTTGGACGAGATCATCAACTACGTGCAGTCCTTGCAGAACCAAGTCGAGgtgatagtgatagatacactgggcaaataaataaataaataaattacgacacatgttgagattagaaagctgtaactaactggaaagtccgcttgcttcttgggcgcgtcgttgcattgcag
- - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - AGATCA