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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAgtaagttctttcttaggatatatccatcttacaacaggagcataataattgtattagttttacagcttgataaattgagatgaaagcttgtaccctgttc...

Basic information

species Zea mays
transcript GRMZM2G177970_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60398533|gb|DN231349.1|DN231349
EST:     GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA                         ATTACTTTACCATATGAGGCTCCACTGCTTTCTAAAGCAACAAGAAGCACT
genomic: GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAgtaagttctt ... atatctgtagATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACT
EST: gi|211458161|gb|FL127573.1|FL127573
EST:     GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA                         ATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACT
genomic: GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAgtaagttctt ... atatctgtagATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACT
EST: gi|76012104|gb|DT939274.1|DT939274
EST:     GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA                         ATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACT
genomic: GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAgtaagttctt ... atatctgtagATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACT
EST: gi|211458162|gb|FL127574.1|FL127574
EST:     GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA                         ATTACTTTACCATATGAGGC
genomic: GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAgtaagttctt ... atatctgtagATTACTTTACCATATGAGGC
EST: gi|211458163|gb|FL127575.1|FL127575
EST:     GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA                         ATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACT
genomic: GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAgtaagttctt ... atatctgtagATTACTTTACCATATGAGGCGCCACTGCTTTCTAAAGCAACAAGAAGCACT