1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaatggcttattgatgaaagaggaaagctttctcacttttctaagagaacggattatattcatgccattcacctgttcggcctgtcttactgca...
species | Zea mays |
transcript | GRMZM2G177914_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|211467101|gb|FK972980.1|FK972980
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: -G------ATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGAEST: gi|71758093|gb|DR956030.1|DR956030
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|84980466|gb|DW530815.1|DW530815
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|78110300|gb|DV528715.1|DV528715
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|211467090|gb|FK972969.1|FK972969
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: GTCTTTGATAGCTCTGAAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|211467088|gb|FK972967.1|FK972967
genomic: GTCTTTGATAGCTCTGA-GAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTTGT-GAAAACAT-GGACAGATGCTTTCA-GAATGTATGCGAGCTTGEST: gi|71771237|gb|DR969174.1|DR969174
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTT-GTTGAAA-CATTGGACAGATGCTT-CAAGAATGTATGCGAGCTTG
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|19769487|gb|BQ034208.1|BQ034208
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGGCAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|211469615|gb|FK972982.1|FK972982
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|18162805|gb|BM332644.1|BM332644
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|9742647|gb|BE518795.1|BE518795
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|37379099|gb|CF626280.1|CF626280
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|5499044|gb|AI854911.1|AI854911
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|211472147|gb|FK972996.1|FK972996
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTEST: gi|211467100|gb|FK972979.1|FK972979
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTT
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|149073163|gb|EE161440.2|EE161440
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|78110301|gb|DV528716.1|DV528716
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|148948825|gb|EC894231.2|EC894231
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|149090359|gb|EE179665.2|EE179665
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGNCTTCA-GAATGTATGCGAGCTTGACEST: gi|211469626|gb|FK972993.1|FK972993
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATG-CTTCAAGAATGTATGCGAGCTTGAC
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTEST: gi|149107282|gb|EE189165.2|EE189165
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCT
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|211467091|gb|FK972970.1|FK972970
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACAEST: gi|149107281|gb|EE189164.2|EE189164
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
EST: TGTTTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG TGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
genomic: TGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaat ... tcgtgcacagTGTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTATGCGAGCTTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaatggcttattgatgaaagaggaaagctttctcacttttctaagagaacggattatattcatgccattcacctgttcggcctgtcttactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT