1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGTGGCCATGTAGCACCACCAAAATCATCAGACTTCTTTCAAGAGTATGGGATGGGTAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAGgtaaaacctgtggcgatggagttgttcaattcatatgcaagtttccctagttaaatcaaactattgtggtatctagtcttttctaaccttaggaacctta...
species | Zea mays |
transcript | GRMZM2G176612_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAG GTTGAGGAAACTGATGAAGCAAGGAAGAAATTCTCTAATGCCAAGGCGATCEST: gi|67020510|gb|CO449259.1|CO449259
genomic: TAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAGgtaaaacctg ... ctcttcccagGTTGAGGAAACTGATGAAGCAAGGAAGAAATTCTCTAATGCCAAGGCGATC
EST: GGATGGGTAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAG GTTGAGGAAACTGATGAAGCAAGGAAGAAATTCTCTAATGCCAAGGCGATCEST: gi|110942246|gb|EE162403.1|EE162403
genomic: GGATGGGTAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAGgtaaaacctg ... ctcttcccagGTTGAGGAAACTGATGAAGCAAGGAAGAAATTCTCTAATGCCAAGGCGATC
EST: GGATGGGTAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAG GTTGAGGAAACTGATGAAGCAAGGAAGAAATTCTCTAATGCCAAGGGGATC
genomic: GGATGGGTAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAGgtaaaacctg ... ctcttcccagGTTGAGGAAACTGATGAAGCAAGGAAGAAATTCTCTAATGCCAAGGCGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGCCATGTAGCACCACCAAAATCATCAGACTTCTTTCAAGAGTATGGGATGGGTAATGGGTTCCAGAAGAAATCTAGCAATGCCTCAAAAACTCAGgtaaaacctgtggcgatggagttgttcaattcatatgcaagtttccctagttaaatcaaactattgtggtatctagtcttttctaaccttaggaacctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaaa