1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTGCATATAATTCTGCAAAATCTAAGAACAAATTTCATTTTTGGGGAAGCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAGgtaacaaaatgaagctacctaacactatagtttgctttttatatgaatatgattcttttatgttgggaaaggattgtgtaatcaccaggattctgtttccag
species | Zea mays |
transcript | GRMZM2G175799_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAG GTTATGTATGCTTTTGTTATGAGGCCTGAAAGCTTACEST: gi|149077725|gb|EE166441.2|EE166441
genomic: GCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAGgtaacaaaat ... ctgtttccagGTTATGTATGCTTTTGTTATGAGGCCTGAAAGCTTAC
EST: GCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAG GTTATGTATGCTTTTGTTATGAGGCCCGAAAGCTTACCTAAGTCGTACCCAEST: gi|78110075|gb|DV528490.1|DV528490
genomic: GCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAGgtaacaaaat ... ctgtttccagGTTATGTATGCTTTTGTTATGAGGCCTGAAAGCTTACCTAAGTCGTACCAA
EST: GCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAG GTTATGTATGCTTTTGTTATGAGGCCTGAAAGCTTACCTAAGTCGTACCAAEST: gi|211129021|gb|FL249209.1|FL249209
genomic: GCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAGgtaacaaaat ... ctgtttccagGTTATGTATGCTTTTGTTATGAGGCCTGAAAGCTTACCTAAGTCGTACCAA
EST: ATTGCTTTTTTCATTAGCATGTGCCCAG GTTATGTATGCTTTTGTTATGAGGCCTGAAAGCTTACCTAAGTCGTACCAA
genomic: ATTGCTTTTTTCATTAGCATGTGCCCAGgtaacaaaat ... ctgtttccagGTTATGTATGCTTTTGTTATGAGGCCTGAAAGCTTACCTAAGTCGTACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGCATATAATTCTGCAAAATCTAAGAACAAATTTCATTTTTGGGGAAGCCATTGGAGACATGGAGATGCATTGCTTTTTTCATTAGCATGTGCCCAGgtaacaaaatgaagctacctaacactatagtttgctttttatatgaatatgattcttttatgttgggaaaggattgtgtaatcaccaggattctgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG