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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTCCGATACGTTTGATCCCCAAGGACGCACTTTCGATATTTCAGAAAATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccactgaaaatataataactagaactaagtttgcatatcttgaaaaaaataggtatttacttaacacatattcaaccttggtcaaacag

Basic information

species Zea mays
transcript GRMZM2G174830_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242321|gb|DT650235.1|DT650235
EST:     ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT                         CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
EST: gi|78114801|gb|DV533189.1|DV533189
EST:     ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT                         CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
EST: gi|71433192|gb|DR814242.1|DR814242
EST:     ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT                         CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
EST: gi|211353516|gb|FL063245.1|FL063245
EST:     TTGGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT                         CATGCAGCAGCCATTG
genomic: TTGG-ACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTG
EST: gi|211351120|gb|FL063241.1|FL063241
EST:     ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT                         CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTTGTGGTGATTCT
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
EST: gi|211351122|gb|FL063243.1|FL063243
EST:     ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT                         CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTTGGTGGTGAT
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTT-GGTGGTGAT