1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGGCCCGAGATCAATTTGTCATTCGTGCTGGCACACTAACTGAAGTTTATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAGgtattcaattccttgcatttacttgttgctgcaattgattaaaagttaagtccatggtctgttacttcagttagtagaataacatccatataggtacttacccttctgttttacttcattttctttccag
species | Zea mays |
transcript | GRMZM2G174757_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAG TACTGGACAGATAGTTTCATTCAGTGGTCCCCTCTGGGAACCTACATGGCAEST: gi|22542190|gb|BU092628.1|BU092628
genomic: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAGgtattcaatt ... ttctttccagTACTGGACAGATAGTTTCATTCAGTGGTCCCCTCTGGGAACCTACATGGCA
EST: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAG TACTGGACAGATAGTTTCTTTCAGTGGTCCCCTCTGGGAACCTACATGGCAEST: gi|149079566|gb|EE168554.2|EE168554
genomic: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAGgtattcaatt ... ttctttccagTACTGGACAGATAGTTTCATTCAGTGGTCCCCTCTGGGAACCTACATGGCA
EST: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAG TACTGGACAGATAGTTTCATTCAGTGGTCCCCTCTGGGAACCTACATGGCAEST: gi|60350764|gb|DN217737.1|DN217737
genomic: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAGgtattcaatt ... ttctttccagTACTGGACAGATAGTTTCATTCAGTGGTCCCCTCTGGGAACCTACATGGCA
EST: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAG TACTGGACAGATAGTTTCATTCAGTGGTCCCCTCTGGGAACCTACATGGCA
genomic: ATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAGgtattcaatt ... ttctttccagTACTGGACAGATAGTTTCATTCAGTGGTCCCCTCTGGGAACCTACATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCCCGAGATCAATTTGTCATTCGTGCTGGCACACTAACTGAAGTTTATTGGAATGATGCAAGAAAGCTAGCACCTGAGCTTGTTTTTCAAAAGCAGgtattcaattccttgcatttacttgttgctgcaattgattaaaagttaagtccatggtctgttacttcagttagtagaataacatccatataggtacttacccttctgttttacttcattttctttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT