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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaatcaaagactttatgtttactggttcatcctttcttttgttgatactttcctttccttattctactgatcattgcccttttcccag

Basic information

species Zea mays
transcript GRMZM2G174696_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174696_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g20750.1 (Oryza sativa), 5'ss of exon 4
TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaatcaaagactttatgtttactggttcatcctttcttttgttgatactttcctttccttattctactgatcattgcccttttcccag
||||| ||  | ||||||||||||||||||||||| || ||||||||||||||||||||| |||||||  |||| ||  ||||| ||||||||||||||  |||||   |      |||||   ||||| ||| | | | | | |||    |   |||| |||||   ||  | |   | | || |||||
TTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGgtacctgaatttga------atgttg--tggttaatcttatgtgt-gatgactgatatttttctttatttggcttttgaaatctcattccccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353843|gb|CD438200.1|CD438200
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|51593036|gb|CV072182.1|CV072182
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|148944949|gb|EC890114.2|EC890114
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|71428447|gb|DR809497.1|DR809497
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|76294141|gb|DV033709.1|DV033709
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|148937183|gb|EC881364.2|EC881364
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACGAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|5268993|gb|AI770957.1|AI770957
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAAGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|6095402|gb|AW120069.1|AW120069
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|6095403|gb|AW120070.1|AW120070
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|149090165|gb|EE179465.2|EE179465
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|89762284|gb|DY689955.1|DY689955
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
EST: gi|6095404|gb|AW120071.1|AW120071
EST:     GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAG                         CTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG
genomic: GTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGgtagatgaat ... cttttcccagCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACTTCGACTACAAG