1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGAGATACATTTAAACAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatcatgtcattgcaaatagcatcttcccctgcttgcgaattgctcttttctttttttatgtcataaataatataaacaaaaacctactcttct...
species | Zea mays |
transcript | GRMZM2G174315_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|78125709|gb|DV544093.1|DV544093
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|78025864|gb|DV494251.1|DV494251
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: TTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|87154057|gb|DY398846.1|DY398846
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|19351885|gb|BM896417.1|BM896417
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: GTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|78083300|gb|DV511693.1|DV511693
genomic: GTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|78080954|gb|DV509366.1|DV509366
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|88755923|gb|DY540064.1|DY540064
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|22491379|gb|BU051302.1|BU051302
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCNCCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|149095322|gb|EE180958.2|EE180958
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCGEST: gi|18660661|gb|BM500981.1|BM500981
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
EST: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAG ATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
genomic: CTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatc ... tcatctgcagATGTGGAAGATTCCCACCTGAGGTTAGAACTGCAATTCCAGTGGAAGGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAGATACATTTAAACAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTGTATGCACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGgtaatgtatcatgtcattgcaaatagcatcttcccctgcttgcgaattgctcttttctttttttatgtcataaataatataaacaaaaacctactcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaaa