1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCACGATGAATCAAATAAGCGACAGAAGGTTGATGATGATGTCCAAGAGGGTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattactgtttttggcttctctccagctaattactccctctgttacaaatcataggccacttcgatttttgttggttcataaattttgctatgtaaa...
species | Zea mays |
transcript | GRMZM2G174204_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|78109120|gb|DV527537.1|DV527537
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|37398604|gb|CF636617.1|CF636617
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCGGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|71440545|gb|DR821595.1|DR821595
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|211464729|gb|FL207495.1|FL207495
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|211464737|gb|FL207503.1|FL207503
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGAYACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAEST: gi|166510769|gb|EG093482.1|EG093482
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAA
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGEST: gi|14883663|gb|BI273476.1|BI273476
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAG
EST: GTGCTCTTCCTCCTTATCTACTCGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAEST: gi|149079698|gb|EE168699.2|EE168699
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAA
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|211296298|gb|FL480002.1|FL480002
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: CGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|15053622|gb|BI359167.1|BI359167
genomic: CGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCTTATCTACTCGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|211464732|gb|FL207498.1|FL207498
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAEST: gi|71440546|gb|DR821596.1|DR821596
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAA
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|148933462|gb|EC877158.2|EC877158
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|15053623|gb|BI359168.1|BI359168
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCTTATCTACTCGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|60350420|gb|DN217393.1|DN217393
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|211487760|gb|FL392997.1|FL392997
genomic: GATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|60340980|gb|DN207953.1|DN207953
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: TCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|50332541|gb|CO527667.1|CO527667
genomic: TCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|22545768|gb|BU098142.1|BU098142
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTCGATCGTGATCAGACACAGCGTGCCAAG GTCCTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|31359359|gb|CD443716.1|CD443716
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGGATCTACTGGATCGGGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|211464730|gb|FL207496.1|FL207496
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|15313826|gb|BI478973.1|BI478973
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCTTATCTACTCGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|211462214|gb|FL207491.1|FL207491
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTCGATCGTGATCAGACACAGCGTGCCAAG GTCCTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGEST: gi|76917038|gb|DV166648.1|DV166648
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTG
EST: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAG GTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGEST: gi|22819549|gb|BU499639.1|BU499639
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCGTATCTACTCGATCGTGATCAGACACAGCGTGCCAAG GTCCTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
genomic: GTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattact ... tgaagcgtagGTACTCAGCAACACAATCAAGCAAAAGAGGAAGGAAAAGGCTGGCAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGATGAATCAAATAAGCGACAGAAGGTTGATGATGATGTCCAAGAGGGTGCTCTTCCTCCGTATCTACTGGATCGTGATCAGACACAGCGTGCTAAGgtggattactgtttttggcttctctccagctaattactccctctgttacaaatcataggccacttcgatttttgttggttcataaattttgctatgtaaa
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