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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTCAGTCCTTCGGTTCGCCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaacatccttgttccag

Basic information

species Zea mays
transcript GRMZM2G173428_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTCAGTCCTTCGGTTCGCCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaacatccttgttccag
|||||||||||||| |||||||| || || || || || ||||| || || ||||||||||||||||||||||||||    || |     ||  |       || | ||||             ||| |  ||  ||||| |||| |||  |  || | |||
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgtaagtggtcgagtgataattaagc----atatactta------------gatcaatagtcaattggttaataaactgctctgctgcag

upper sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTCAGTCCTTCGGTTCGCCTTCATAGAGTTCACTGATGAGGgtaatata----tccatatccaaccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaacatccttgttccag
||||| |||||||| || ||||| || || |||||||| ||| |||| || ||||| |||||||||||||| ||||  ||     ||  |||  || | | ||      |  |  || |  ||  |   | ||  |||  |    |  ||    |  | |      
GTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtca--ttttgggacttgtag------

upper sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTCAGTCCTTCGGTTCGCCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaacatccttgttccag
||||| ||||||||||| || || ||||||||||| ||||||||||| || |||||||||||||||||||| |||| ||| | ||| | |   | | | |  |   |  |  |  ||||| |    |    ||| | ||  |  ||    |  |  || |||
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattat-ttcattttc--tcggttctgga---gtatcatcagtgtacta---cagtggttaaatgtcttgtgg---ttttgttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78116430|gb|DV534817.1|DV534817
EST:     AGACCCAAACTCAGTCCTTCGGTTCGCCTTCATAGAGTTCACTGATGAGG                         AGGGTGCAAGGGCTGCTCTGAATCTGTCAGGAACTGTGCTCGGATATTATC
genomic: AGACCCAAACTCAGTCCTTCGGTTCGCCTTCATAGAGTTCACTGATGAGGgtaatatatc ... cttgttccagAGGGTGCAAGGGCTGCTCTGAATCTGTCAGGAACTGTGCTCGGATATTATC