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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAAGATTCAGTGGGACAAGAGGCAGCACAAAAGACAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAGgttttactttattttaccacttctgttattttcttctctctggtatttttttagttttgttccatgcaagatgtattttatgattctcctattgttatca...

Basic information

species Zea mays
transcript GRMZM2G173416_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211007212|gb|FL448365.1|FL448365
EST:     CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAG                         T
genomic: CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAGgttttacttt ... tgtttagtag-
EST: gi|211007212|gb|FL448365.1|FL448365
EST:     CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAG                         T
genomic: CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAGgttttacttt ... tgtttagtag-
EST: gi|211007212|gb|FL448365.1|FL448365
EST:     CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAG                         T
genomic: CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAGgttttacttt ... tgtttagtag-
EST: gi|211072100|gb|FK968189.1|FK968189
EST:     CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAG                         GAAGGGAATTTCAATCCTTCGAAAGATGAAGAGAAGCATGCCTTTCTGCTG
genomic: CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAGgttttacttt ... tgtttagtagGAAGGGAATTTCAATCCTTCGAAAGATGAAGAGAAGCATGCCTTTCTGCTG
EST: gi|101393672|gb|EB818768.1|EB818768
EST:     CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAG                         GAAGGGAATTTCAATCCTTCGAAAGATGAAGAGAAGCATGCCTTTCTGCTG
genomic: CAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAGgttttacttt ... tgtttagtagGAAGGGAATTTCAATCCTTCGAAAGATGAAGAGAAGCATGCCTTTCTGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGAAGATTCAGTGGGACAAGAGGCAGCACAAAAGACAGTTCCGATATGCGAACTGGAGGAGAAGGCATTAGTTTCACTGGCCAAGgttttactttattttaccacttctgttattttcttctctctggtatttttttagttttgttccatgcaagatgtattttatgattctcctattgttatca

- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA