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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATCAAATGATGGTCTGTTATCTTTGAAGACCAATAAAGAAAATTTTGGTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAGgtagtaacacagagcacttgcagttcttgagattttacacatattgattcattcattctagttcctgacgtgaaaggacctctagctgagttggttaggtggtattcttcttaatacaatactcgagtgctttcttacgccttgtaggtcgagtttttttaattctagttcctgacatagtttcaatccttgtag

Basic information

species Zea mays
transcript GRMZM2G172322_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G172322_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g06740.1 (Oryza sativa), 5'ss of exon 4
TAAATCAAATGATGGTCTGTTATCTTTGAAGACCAATAAAGAAAATTTTGGTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAGgtagtaacacagagcacttgcagttcttgagattttacacatattgattcattcattctagttcctgacgtgaaaggacctctagctgagttggttaggtggtattcttcttaatacaatactcgagtgctttcttacgccttgtaggtcgagtttttttaattctagttcctgacatagtttcaatccttgtag
 ||||||||||||||| || ||||| ||||||| || ||||||| | ||||||||||||||||||| ||||| ||||||||||| | ||||||  |||||||     |||    ||  |||   | |||   ||||     | ||   || | |||     ||      ||  | | | |  |  ||  |||| | | || ||  | |   |  ||                                                                               
CAAATCAAATGATGGTTTGCTATCTCTGAAGACAAACAAAGAAACTATTGGTGGGTTCTCACATGTTATGTTCGCAACAGGTCGTAAACCAAACACAAAGgt--ctgcac----catatgcgccttttg---ttttcactttgttagatcttgcatctccattt-----gttgatgcatccatc-ctttgttgctgatgttgttctttaacttgtag------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18660509|gb|BM500899.1|BM500899
EST:     GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGAC-AAATTCAAAG                         AACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAACGGTGCAATA
genomic: GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAGgtagtaacac ... atccttgtagAACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAACGGTGCAATA
EST: gi|211088209|gb|FL308841.1|FL308841
EST:     GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAG                         AACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAA
genomic: GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAGgtagtaacac ... atccttgtagAACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAA
EST: gi|32839140|gb|CD978821.1|CD978821
EST:     GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAG                         AACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAACGGTGCAATA
genomic: GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAGgtagtaacac ... atccttgtagAACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAACGGTGCAATA
EST: gi|32836456|gb|CD976134.1|CD976134
EST:     GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAG                         AACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAACGGTGCAATA
genomic: GTGGGTTCTCACATGTAATGTTTGCAACAGGTCGCAGACCAAATTCAAAGgtagtaacac ... atccttgtagAACCTTGGACTGGAAGCGGTGGGGGTTGAAATGGATAAGAACGGTGCAATA