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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtctgtcatttcctgttgccatccagcctgaattcttgctgataacattgtgtctgcagcag

Basic information

species Zea mays
transcript GRMZM2G172001_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g66420.2 (Oryza sativa), 5'ss of exon 4
GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtctgt-cat---ttcctgttgccatccagcctgaattcttgctgataaca--ttgtgtctgcagcag
||| || ||||||||||||||||||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||| ||||||||| ||||||||||||   ||  |||    | |||||         | |||||   ||||||  |||  || | ||||||||||
GCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaatgagcatgcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcagcag

upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g66420.1 (Oryza sativa), 5'ss of exon 4
GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtctgt-cat---ttcctgttgccatccagcctgaattcttgctgataaca--ttgtgtctgcagcag
||| || ||||||||||||||||||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||| ||||||||| ||||||||||||   ||  |||    | |||||         | |||||   ||||||  |||  || | |||||||   
GCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaatgagcatgcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397867|gb|DN230683.1|DN230683
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|149042113|gb|EE047091.2|EE047091
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|149042113|gb|EE047091.2|EE047091
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|149042113|gb|EE047091.2|EE047091
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|149042113|gb|EE047091.2|EE047091
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|60352400|gb|DN219373.1|DN219373
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGTTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|5456317|gb|AI834007.1|AI834007
EST:     AGAAGNCNCCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGCAG                       
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT---Ggtaaatgtct ... tctgcagc
EST: gi|76921025|gb|DV168421.1|DV168421
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|78077036|gb|DV505470.1|DV505470
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78077036|gb|DV505470.1|DV505470
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78077036|gb|DV505470.1|DV505470
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78077036|gb|DV505470.1|DV505470
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78023803|gb|DV492190.1|DV492190
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCNTAGTTCAAAAGTGCAG                       
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT---Ggtaaatgtct ... tctgcagc
EST: gi|71436584|gb|DR817634.1|DR817634
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|22935540|gb|BU571815.1|BU571815
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|211166632|gb|FK973167.1|FK973167
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGCAG                       
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT---Ggtaaatgtct ... tctgcagc
EST: gi|71426022|gb|DR807072.1|DR807072
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|26560007|gb|CA832242.1|CA832242
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|71756745|gb|DR954682.1|DR954682
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|87157435|gb|DY402224.1|DY402224
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|78110540|gb|DV528950.1|DV528950
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78110540|gb|DV528950.1|DV528950
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78110540|gb|DV528950.1|DV528950
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78110540|gb|DV528950.1|DV528950
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74241423|gb|DT649337.1|DT649337
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|71438530|gb|DR819580.1|DR819580
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|71438530|gb|DR819580.1|DR819580
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|71438530|gb|DR819580.1|DR819580
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|71438530|gb|DR819580.1|DR819580
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|78110698|gb|DV529096.1|DV529096
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAG
EST: gi|71435348|gb|DR816398.1|DR816398
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         TCAAGAGCAAAGTCTCGTTTCAA-GGCTAAGGTCCCCCCAAGACGAA
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTT-CAAAGGCTAAGGTCCCCC-AAGACGAA
EST: gi|149108563|gb|EE292842.2|EE292842
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|149108563|gb|EE292842.2|EE292842
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|149108563|gb|EE292842.2|EE292842
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|149108563|gb|EE292842.2|EE292842
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74237049|gb|DT644963.1|DT644963
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGCAG                       
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT---Ggtaaatgtct ... tctgcagc
EST: gi|78110539|gb|DV528949.1|DV528949
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGCAG                       
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT---Ggtaaatgtct ... tctgcagc
EST: gi|74243375|gb|DT651289.1|DT651289
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74243375|gb|DT651289.1|DT651289
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74243375|gb|DT651289.1|DT651289
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74243375|gb|DT651289.1|DT651289
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74237050|gb|DT644964.1|DT644964
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74237050|gb|DT644964.1|DT644964
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74237050|gb|DT644964.1|DT644964
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|74237050|gb|DT644964.1|DT644964
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG                         C
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcag-
EST: gi|149042112|gb|EE047090.2|EE047090
EST:     AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGCAG                       
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT---Ggtaaatgtct ... tctgcagc

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 54

GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAGAGCGGTGATGACGATGAGGATGAGGAGGCAGACGAGCACAACAATACCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 20

GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAGAGCGGTGATGACGATGAGGATGAGGAGGCAGACGAGCACAACAATACCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 22

GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAGAGCGGTGATGACGATGAGGATGAGGAGGCAGACGAGCACAACAATACCT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 33

GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... tctgcagcagTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAGAGCGGTGATGACGATGAGGATGAGGAGGCAGACGAGCACAACAATACCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCACGATATTTGAGGTAGTGACAGGAGCAGCCAAGAAGCAGGCGAAGGAGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtctgtcatttcctgttgccatccagcctgaattcttgctgataacattgtgtctgcagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA