Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagcacattcagcgtgtgtgtgtgtgtgcgtgcttgctcgcttaattacctgctgacaacctacgcgcattcaattctcatcag

Basic information

species Zea mays
transcript GRMZM2G171390_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171390_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 4
---GCTTGACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagcac-attcag-cgtgtgtgtgtgtgtgcgtgcttgctcgcttaattacctgctgacaacctacgcgcattcaattctcatcag
    ||  ||||||| || |||||| |||| ||||| ||||| || |||||||||||||||||||| || |||||||| || || || |    |   |   |   |||   |  | |||||| | | | | |  | |  |    ||    | |  |  | ||  ||   |  |       ||      |  ||||
GAGTCTGAACGTGTCTGGTCCAGTGCAGCCATACAATCCCAGTCTGAAGAACTTCTGGTACCCAGTTGCTTTCTCCAGTGACCTAAAAGACGATACAATGgtaaaaacaacgtgcgattcaggcatttttttacgaggtcagagttagcagttgcagaaacttatgtttatttgatgtggtttgcgcattctcag

upper sequence: GRMZM2G171390_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 4
---GCTTGACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagcacattcagcgtgtgtgtgtgtgtgcgtgcttgctcgcttaattacctgctgacaacctacgcgcattcaattctcatcag
    || |||||||| || |||||| |||| ||||| ||||  || || ||||||||||||||||| | ||||||| | || || || | |   || || |||||||| ||    ||    |  |  | |     ||   |      |  ||||| |  || |   |        |  |    ||||||    
GAGTCTGGACGTGTCTGGTCCAGTGCAGCCATACAATCCCAATCTGAAAAACTTCTGGTACCCAGTTGTCTTCTCCGGTGACCTGAAAGAT---GATACAATGgtaacgcaatgaatgattcaggcatttaca-atgtccggagtaccagttaatgatatgttttgatgtggtctgtgt---gttctcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76290758|gb|DV030326.1|DV030326
EST:     TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATG                         GTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
genomic: TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagc ... ttctcatcagGTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
EST: gi|91055542|gb|EB165960.1|EB165960
EST:     TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATG                         GTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
genomic: TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagc ... ttctcatcagGTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
EST: gi|148944802|gb|EC889946.2|EC889946
EST:     TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATG                         GTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
genomic: TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagc ... ttctcatcagGTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
EST: gi|71437528|gb|DR818578.1|DR818578
EST:     TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATG                         GTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
genomic: TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagc ... ttctcatcagGTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
EST: gi|149014006|gb|EE043522.2|EE043522
EST:     TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATG                         GTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
genomic: TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagc ... ttctcatcagGTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
EST: gi|78089256|gb|DV517630.1|DV517630
EST:     TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATG                         GTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
genomic: TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagc ... ttctcatcagGTGCCAATCGACTGCTTCGAGGAGCAGTGGGTGATCTTCCGAGGCAAAGAC
EST: gi|71447084|gb|DR828134.1|DR828134
EST:     TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATG                         GTGCCAATCGACTGCTTCGAGGA
genomic: TCTGGTACCCAGTCGCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGgtaactcagc ... ttctcatcagGTGCCAATCGACTGCTTCGAGGA