Sequence
atgc intronic sequence ATGC exonic sequenceGAGCCAAGAACAAACAGCCACGTCGGAGGCTTGACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCcagcgatctcaaggctcctgacaccatggtaactcagcacattcagcgtgtgtgtgtgtgtgcgtgcttgctcgcttaattacctgctgacaacctacgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171390_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 4
GAGCCAAGAACAAACAGCCACGTCGGAGGCTTGACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCcagcgatctcaaggctcctgacaccatggtaactcagcac-attcag-cgtgtgtgtgtgtgtgcgtgcttgctcgcttaattacctgctgacaacct-acgc-----------------
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-------------------------GAGTCTGAACGTGTCTGGTCCAGTGCAGCCATACAATCCCAGTCTGAAGAACTTCTGGTACCCAGTTGCTTTCTCCAGTGACCTAAAAGACGATACAATGgtaaaaacaacgtgcgattcaggcatttttttacgaggtcagagttagcagttgcagaaacttatgtttatttgatgtggtttgcgcattctcag
upper sequence: GRMZM2G171390_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 4
GAGCCAAGAACAAACAGCCACGTCGGAGGCTTGACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCcagcgatctcaaggctcctgacaccatggtaactcagcacattcagcgtgtgtgtgtgtgtgcgtgcttgctcgcttaattacctgctg----acaacctacgc--------
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-------------------------GAGTCTGGACGTGTCTGGTCCAGTGCAGCCATACAATCCCAATCTGAAAAACTTCTGGTACCCAGTTGTCTTCTCCGGTGACCTGAAAGAT---GATACAATGgtaacgcaatgaatgattcaggcatttaca-atgtccggagtaccagttaatgatatgttttgatgtggtctgtgtgttctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71764822|gb|DR962759.1|DR962759EST: AAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTC TGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAG
genomic: AAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCcagcgatctc ... atcccttctcTGCTGCCTCCTTCAGGATTTACGGTCCACGCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCCAAGAACAAACAGCCACGTCGGAGGCTTGACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTCGCCTTCTCcagcgatctcaaggctcctgacaccatggtaactcagcacattcagcgtgtgtgtgtgtgtgcgtgcttgctcgcttaattacctgctgacaacctacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC