Sequence
atgc intronic sequence ATGC exonic sequenceATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtctgagctttagtcagacattttttaagtttgtttggcttatatggctcctgtcttaaaacaataatctgaaatcattttgtgtttttcatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 4
ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtctgagctttagtc---agacattttttaagtttgtttggct-tatatggctcctgtcttaaaacaataatctgaaatcattttgtgtttttcatag
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ATTTCTAAAAGCAAGGAGATTTGACATTGAGAAAGCAAAGCAAATGTGGACTGACATGCTTAAATGGAGGAAGGAGTACGGTACAGATACAATTGTTGAGgttagtgttcttgcttgtgcctataaaacaatttggattttgtttggctataaataatgcctgta--actacatttctctgtag--------------------
upper sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 3
ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtctgagctttagtcagacattttttaagtttgtttggcttatatggctcctgtcttaa-aacaataatctgaaatcattttg----tgtttttcatag---------------------------------
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ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
upper sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 3
ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtctgagctttagtcagacattttttaagtttgtttggcttata--tggctcctgtcttaaaacaataatctgaaatcattttgtgtttttcatag-----------------
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ATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGGCCAATATGATCCAATGGAGGAAAGAATATGGTACAGATACAATTATGGAGgtga---tccatcttatacattaatatatgtttaatttgataatctgaacattgatttttttctttctttcggaatttggggt--tcatgtatattacactgtggtttctactctatag
upper sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA14G07850.1 (Glycine max), 5'ss of exon 3
ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtctgagctttagtcagacattt--tttaagtttgtttggcttatatggctcc-tgtcttaaaacaataatctgaaatcattttgtgtttttcatag--------------------------
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ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCAAAGCACATGTGGGCCAACATGATCCACTGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagttatccgatttgaaaaatataatcaacttattttggttgatcctgttttatttgatcaactgtactgtttttttgaaatcgttgttcatgctatactactttggtttcctgtctttctctttag
upper sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 3
ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgt---ctgagctttagtcagacattttttaa--gtttgt----ttggcttatatggctcctgtcttaaaacaataat-------ctgaaatca---ttttgtgtttttcatag
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GTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGAGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTACTGACACTATTATGGAGgtaaatgtagatagaatttggataatatttactataataggttacaagattagcctctgcggtggttggatttgtttgttattgcatcctctgggcttaatgttttgtgtttgcgttag
upper sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 4
ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgt--cagtgtctgagctttagtcagacattttttaagtttgtttggcttatatggctcctgtcttaaaacaataatctgaaatcattttgtgt-ttttcatag--
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GTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGgtatcgatatctgatgatttgcctga-atttggtga---tggattattcaaaatacttttggcatctggctttgagttaatat-attttctatgcttttgtaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13178166|gb|BG349424.1|BG349424EST: GCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAG GACTTCGAATACACTGAGTTGGACGCTG-TTTGCAATATTATCCTCATGGT
genomic: GCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtct ... tttttcatagGACTTCGAATACACTGAGTTGGACGCTGTTTTGCAATATTATCCTCATGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtctgagctttagtcagacattttttaagtttgtttggcttatatggctcctgtcttaaaacaataatctgaaatcattttgtgtttttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG