1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTGTGATTGGCTTGCCAATGTTTCGTTTCTGTTTTTTGTTATTTCATGGGTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattcttctgttctggctcataagtctatcagattcttatgccaagaaaaatcatcgagttcgtaaaagtttgtttgcatatacagtcgaaagtaga...
species | Zea mays |
transcript | GRMZM2G170868_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTCCATTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCCEST: gi|78076529|gb|DV504963.1|DV504963
genomic: ATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattctt ... tttgtctcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCC
EST: GTTTTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCCEST: gi|86465981|gb|DY232354.1|DY232354
genomic: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattctt ... tttgtctcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCC
EST: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCCEST: gi|78085862|gb|DV514255.1|DV514255
genomic: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattctt ... tttgtctcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCC
EST: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCCEST: gi|211145609|gb|FL254132.1|FL254132
genomic: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattctt ... tttgtctcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCC
EST: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCCEST: gi|211147030|gb|FL254134.1|FL254134
genomic: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattctt ... tttgtctcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCC
EST: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCC
genomic: GTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattctt ... tttgtctcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAATTTTGATGGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTGATTGGCTTGCCAATGTTTCGTTTCTGTTTTTTGTTATTTCATGGGTTCTTCTCCGCCTCACTTATTTTCCATTCTGGATTCTGAGAAGTACAAGgtaaattcttctgttctggctcataagtctatcagattcttatgccaagaaaaatcatcgagttcgtaaaagtttgtttgcatatacagtcgaaagtaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa