1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGAGGATGAAGAAAGGCGTGATCATCGTGAACAACGCTCGAGGCGCGATCATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGGgtatgtactggctgctgctgtgtcctcctcattttcagcgggttagcatctgttagcaccatggcgccaaaacagaagcttgaagaggcgggtcgtgcagaggaagaagtggcgagatatagaaaaacgccatgctcgccagactcatacgtctcaaactgttgtatgcgtgatgatcag
species | Zea mays |
transcript | GRMZM2G170602_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGG GATACGGCGGCGATGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGTEST: gi|111197762|gb|EE295897.1|EE295897
genomic: CATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGGgtatgtactg ... tgatgatcagGATACGGCGGCGATGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGT
EST: CATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGG GATACGGCGGCGATGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGTEST: gi|149085309|gb|EE174814.2|EE174814
genomic: CATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGGgtatgtactg ... tgatgatcagGATACGGCGGCGATGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGT
EST: CATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGG GATACGGCGGCGATGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGT
genomic: CATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGGgtatgtactg ... tgatgatcagGATACGGCGGCGATGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAGGATGAAGAAAGGCGTGATCATCGTGAACAACGCTCGAGGCGCGATCATGGACACGCAAGCCGTGGCGGACGCTTGCGCCACCGGACACATCGCGGgtatgtactggctgctgctgtgtcctcctcattttcagcgggttagcatctgttagcaccatggcgccaaaacagaagcttgaagaggcgggtcgtgcagaggaagaagtggcgagatatagaaaaacgccatgctcgccagactcatacgtctcaaactgttgtatgcgtgatgatcag
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