1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAATGCATTTCAAAGAAGACGTAAGTGGGACAAGAGGATGCTGGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtgaaaataatttcttcttattgaaggctgtattattaaactaagtggggacttgaatgtcaggtaatctggtttaggatttagggtttacctt...
species | Zea mays |
transcript | GRMZM2G170291_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCTEST: gi|149095617|gb|EE168978.2|EE168978
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCTEST: gi|76018500|gb|DT945670.1|DT945670
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCTEST: gi|71771442|gb|DR969379.1|DR969379
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACCTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCTEST: gi|91872355|gb|EB402312.1|EB402312
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCTEST: gi|84980468|gb|DW530817.1|DW530817
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACGTCAGCCATCCTGAEST: gi|76016191|gb|DT943361.1|DT943361
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGA
EST: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCTEST: gi|74236588|gb|DT644502.1|DT644502
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: GTTCCACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCTEST: gi|76010861|gb|DT938031.1|DT938031
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: TTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTTGA-TGTCAG TCATGAAGAAATCGACGTCAGCCATCC
genomic: TTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTT-GAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATGCATTTCAAAGAAGACGTAAGTGGGACAAGAGGATGCTGGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtgaaaataatttcttcttattgaaggctgtattattaaactaagtggggacttgaatgtcaggtaatctggtttaggatttagggtttacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaataa