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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGCATTTCAAAGAAGACGTAAGTGGGACAAGAGGATGCTGGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtgaaaataatttcttcttattgaaggctgtattattaaactaagtggggacttgaatgtcaggtaatctggtttaggatttagggtttacctt...

Basic information

species Zea mays
transcript GRMZM2G170291_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G170291_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g18200.1 (Oryza sativa), 5'ss of exon 4
AAAATGCATTTCAAAGAAGACGTAAGTGGGACAAGAGGATGCTGGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtgaaaataatttct------tcttattgaaggctgtattattaaactaagtggggacttgaatgtcaggtaatctggtttaggatttagggtttacctt
||||| |||||||||||||||| || ||||| || || ||| |||| ||||||||||| || || |||||||||||||||||||| |||||||||||||||||||    || || |||| |      |  || |     ||| |||||     |      |||| |  | |  |  |  ||    | |   |||||  || |    
AAAATTCATTTCAAAGAAGACGGAAATGGGATAAAAGAATGTTGGAGTTTGTTCAACAGGTAGACAAACCCTTAATCTGGTGTGGAGACTTGAATGTCAGgtaattaataatattatttataacaggtagtactagttactg-attatcttgttttccttggacatata-gctacatcttcatact-attttttagatttgat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105400|gb|DV523818.1|DV523818
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|76021195|gb|DT948365.1|DT948365
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|91872354|gb|EB402311.1|EB402311
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|76010860|gb|DT938030.1|DT938030
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|149095617|gb|EE168978.2|EE168978
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|76018500|gb|DT945670.1|DT945670
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|76016190|gb|DT943360.1|DT943360
EST:     GGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|71771442|gb|DR969379.1|DR969379
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACCTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|50332549|gb|CO527675.1|CO527675
EST:     GGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|76014034|gb|DT941204.1|DT941204
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|91872355|gb|EB402312.1|EB402312
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|84980468|gb|DW530817.1|DW530817
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGA
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGA
EST: gi|74236587|gb|DT644501.1|DT644501
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|78105399|gb|DV523817.1|DV523817
EST:     GGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|211321950|gb|FK966256.1|FK966256
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|60351954|gb|DN218927.1|DN218927
EST:     TCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: TCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|76016191|gb|DT943361.1|DT943361
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|74236588|gb|DT644502.1|DT644502
EST:     GTTCCACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|18661354|gb|BM501369.1|BM501369
EST:     GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: GTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|60356095|gb|DN223068.1|DN223068
EST:     CTGGTGTGGGGACTTGAATGTCAG                         TCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
genomic: CTGGTGTGGGGACTTGAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCCTGATTTCTTTAGCAGCGCTAAGCT
EST: gi|76010861|gb|DT938031.1|DT938031
EST:     TTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTTGA-TGTCAG                         TCATGAAGAAATCGACGTCAGCCATCC
genomic: TTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTT-GAATGTCAGgtaatcgtga ... aacattccagTCATGAAGAAATCGACGTCAGCCATCC