1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattattagttatatctggagttgacttgtctaacagaccatatttgaagccagaaatcatatgatggtataaaactgttagtttgtgaatgaggga...
species | Zea mays |
transcript | GRMZM2G169773_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211370168|gb|FL333601.1|FL333601
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211265380|gb|FL345555.1|FL345555
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGEST: gi|211534447|gb|FL327599.1|FL327599
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAG
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCCAGAG CTGGTATTGTCATTGAAGATAAGA-TTGGEST: gi|76293307|gb|DV032875.1|DV032875
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCC-AGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGG
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211525880|gb|FL340827.1|FL340827
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211425017|gb|FL340245.1|FL340245
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGEST: gi|211196276|gb|FL364468.1|FL364468
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTG
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATEST: gi|71429331|gb|DR810381.1|DR810381
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAAT
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211537608|gb|FL330675.1|FL330675
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211231053|gb|FL343819.1|FL343819
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|71449251|gb|DR830301.1|DR830301
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211012583|gb|FL327130.1|FL327130
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|78115059|gb|DV533447.1|DV533447
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211067503|gb|FL350735.1|FL350735
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATEST: gi|78077114|gb|DV505548.1|DV505548
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGAT
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCEST: gi|211146797|gb|FL347631.1|FL347631
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
EST: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAG CTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
genomic: GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattatt ... cgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCTGAAAAGAAAGGAGGAAGCTGCAGCCAGAGgtagattattagttatatctggagttgacttgtctaacagaccatatttgaagccagaaatcatatgatggtataaaactgttagtttgtgaatgaggga
AGCTGA
- - - AAAGAA
- - - - AAGAAA
- - - - - - AAGGAG
- - - - - - - GGAGGA
- - - - - - - - - AAGCTG
- - - - - - - - - - AGCTGC
- - - - - - - - - - - CTGCAG