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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtcttactgaataccaaagcatttctctgttttttcccctgtgtagttacttcggtgcagagaaatttcgaattctctttttcaagtgatagctaagggtggatttcgtttgaaatag

Basic information

species Zea mays
transcript GRMZM2G168681_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168681_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g46580.1 (Oryza sativa), 5'ss of exon 4
CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtcttactgaa-------taccaaa-----gcatttctctgttttttccc----ctgtgtagttacttcggtgcagagaaatttcgaattctctttttcaagtga-------tagctaagggtggatttcgtt-tgaaatag
||||| |||| |||||| ||||||||||||||||||||||| ||||||||||| || || |||||||| |||||  |||||||||||||| ||    |||||       || |  |     ||||| |    || ||| |     |     | | | ||   |  | || |  ||    |    | || ||  |||       |  |||  |  |   || |||    |||||
CTTCAAGCTTACTTTCTCGTGCTTGATGATATCATGGATGATTCTCACACTCGACGTGGTCAGCCTTGTTGGTTTCGGGTGCCTCAGgttggtgaatctgaaattgtcctatctgaatggtgcattgcctaattatttactgaaacaaaacactcattttactttatagtacctttctttcacttgttacatatgaaactttatccctagtgccgccatttgttgcacaatag

upper sequence: GRMZM2G168681_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G01820.3 (Glycine max), 5'ss of exon 4
CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtcttactgaataccaaagcatttctctgttttttcccctgtgtagttacttcggtgcagagaa-atttcgaattctctttttcaagtgatagctaagggtggatttcgtttgaaatag
|||||||| |  |||||||| |||||||| || |||||| |||||||||| || ||||||||||| |||||||| || |||||  ||||| ||       || |  ||    |  |  ||| || ||     ||  | |  |  | |  ||  |  || || ||||  || | |   ||                               
CTTCAGGCATATTTTCTTGTTCTTGATGACATTATGGATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgt----agaaaaataaacatgtgccattgtgttatctta-atgctgctgttgggataaagtaattatctctaatta-ctgtatggtgtag-----------------------------

upper sequence: GRMZM2G168681_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G47770.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtcttactgaataccaaagcatttctctgttttttcccctgtgtagttacttcggtgcagagaaatttcgaattctctttttcaagtgatagctaagggtggatttcgtttgaaatag
|| || ||||  || ||||||||||||||||| |||||| |||||  |||||| || || || |||||||||||||| || |||||||| |   ||     ||       ||     | ||    |   || |      ||   | | |||                                                          
CTCCAAGCTTATTTCCTTGTGCTTGATGATATTATGGATAACTCTGTCACTCGCCGTGGTCAACCTTGCTGGTTCAGAGTTCCTCAGgtaaagttt-tcatattttttgtcacgctgcagtccactagactattctaacacaatgttacag----------------------------------------------------------

upper sequence: GRMZM2G168681_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 4
CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgt-tagtcttactgaataccaaagcatttct-ctgttttttcccctgtgtagtt---acttcggtgcagagaaatttcgaattctctttttcaagtgatagctaagggtggatttcgtttgaaatag
||||| || |  || ||||||||||||||||| |||||| |||| || || ||||| || || ||||||||||||||||| ||  ||||  |  | ||  |    ||      | | | | ||     |   | || | ||   |||| | |  || ||| |  | || | ||||      ||  |||                          
CTTCAAGCATATTTCCTTGTGCTTGATGATATTATGGATAACTCGCATACACGTCGAGGTCAACCTTGCTGGTTCAGGGTTCCCAAGgtgcaagcctatagtgaccctttttttctttacagtgcaagcatgtttgcaattgccactttgataaagtgaagta-ctaactttcttagatttgtcttag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211259831|gb|FL427122.1|FL427122
EST:     TGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGG
genomic: TGACTCTCACACTCGTCGCGGCCAGCCTTGCTGG-TTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGG
EST: gi|74235734|gb|DT643648.1|DT643648
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|213174294|gb|FM187701.1|FM187701
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|67012981|gb|CO441730.1|CO441730
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31354890|gb|CD439247.1|CD439247
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|67026414|gb|CO455163.1|CO455163
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211313668|gb|FL417556.1|FL417556
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAAC-ATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211063602|gb|FL411767.1|FL411767
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAAC-ATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|67011082|gb|CO439831.1|CO439831
EST:     GCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: GCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31356120|gb|CD440477.1|CD440477
EST:     CTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: CTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31349560|gb|CD433917.1|CD433917
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31356964|gb|CD441321.1|CD441321
EST:     TCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: TCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|148969621|gb|EE020470.2|EE020470
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|149032719|gb|EE154945.2|EE154945
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211231857|gb|FL394209.1|FL394209
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCA-CCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|149005406|gb|EE039958.2|EE039958
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|86465893|gb|DY232266.1|DY232266
EST:     AAGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|76010857|gb|DT938027.1|DT938027
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|67014620|gb|CO443369.1|CO443369
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211516106|gb|FL391740.1|FL391740
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211219379|gb|FL389588.1|FL389588
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|71323849|gb|DR798602.1|DR798602
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|78085470|gb|DV513863.1|DV513863
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31363654|gb|CD448011.1|CD448011
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211045019|gb|FL382450.1|FL382450
EST:     ATGACTCTCACACTCGTCGCGGGCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAAC-ATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31354009|gb|CD438366.1|CD438366
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|19351797|gb|BM896329.1|BM896329
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|19351126|gb|BM895658.1|BM895658
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211074805|gb|FL079260.1|FL079260
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGGTCAGGGTGCCTCAG                         GGTGGCTTTATTGCTGCGAATGACGGGATCATCCTTCGCAAC-ATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211077540|gb|FL079268.1|FL079268
EST:     GACTCTCACACTCGTCGCGGC-AGCCTTTGCTGGTT-AGGGTGGCCTCAG                         GTTGGCTTAATT
genomic: GACTCTCACACTCGTCGCGGCCAGCCTT-GCTGGTTCAGGGTG-CCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATT
EST: gi|148939206|gb|EC883672.2|EC883672
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211113965|gb|FL427445.1|FL427445
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|15426718|gb|BI542540.1|BI542540
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|9254158|gb|BE344626.1|BE344626
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31353360|gb|CD437717.1|CD437717
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|67042241|gb|CO468496.1|CO468496
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211229892|gb|FL399550.1|FL399550
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31356532|gb|CD440889.1|CD440889
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|67031682|gb|CO460431.1|CO460431
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|211077538|gb|FL079266.1|FL079266
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAA
EST: gi|211074801|gb|FL079256.1|FL079256
EST:     TGACTCTCACACTCGTCGCGGCCAGC-TTGGCTGGGTCAGGGTGCCTCAG                         GTTGGCTTAAT-GCTGNAAATGACGGGATCATCCTTCGCA-CCATATCTCA
genomic: TGACTCTCACACTCGTCGCGGCCAGCCTTG-CTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
EST: gi|31359510|gb|CD443867.1|CD443867
EST:     ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAG                         GTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA
genomic: ATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 127

CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCACGGATCCTTCGGCGCCACTTTAAGGGCAAACCTTACTATGCTGATCTCC


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 74

CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCACGGATCCTTCGGCGCCACTTTAAGGGCAAACCTTACTATGCTGATCTCC


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 137

CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCACGGATCCTTCGGCGCCACTTTAAGGGCAAACCTTACTATGCTGATCTCC


Block sizes: 45 (upstream exon), 43 (downstream exon)
Score: 72

CTTCAGGCTTTCTTTCTTGTGCTTGATGATATCATGGATGACTCTCACACTCGTCGCGGCCAGCCTTGCTGGTTCAGGGTGCCTCAGgttagtctta ... tttgaaatagGTTGGCTTAATTGCTGCGAATGACGGGATCATCCTTCGCAACCATATCTCACGGATCCTTCGGCGCCACTTTAAGGGCAAACCTTACTATGCTGATCTCC