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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGCCCTCAAGACAATCATTGCTGAAGTTACTACACCGTCACTTGCTGAAAAGATCTTGCTTTCTCTTGCCCCGCAACTCATCAAGGGTGTCAATACTgtaagctttctactcgaatgccaaatattctacattttcaggcctgtatttattcagaccactcaaaatgttcactatgagctggttagtctttgatttc...

Basic information

species Zea mays
transcript GRMZM2G168629_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 4
TATAGCCCTCAAGACAATCATTGCTGAAGTTACTACACCGTCACTTGCTGAAAAGATCTTGCTTTCTCTTGCCCCGCAACTCATCAAGGGTGTCAATACTgtaagctttctactcgaatgccaaatattctacattttcaggcctgtat-ttattcagaccactcaaaatgttcactatgagctggttagtctttgatttc---
||| || || |||||||||||||| |||||||| ||| |  |||||||||||||||| ||| | ||||||||||| || || |||||||| | || | ||||||| | |  | |||  | | || | |  || |    || || |  || ||| ||   |           |||  ||  |  | ||| || ||||   |    
TATTGCTCTGAAGACAATCATTGCGGAAGTTACGACAACAACACTTGCTGAAAAGATTTTGGTGTCTCTTGCCCCACAGCTAATCAAGGGCGCCACTGCTgtaagttcttaattcgtctcctaattgtggtaaaa---catgcttccatattaatcttgcggtgtgcgccattcg-taccatgtagtttgtatttgccgttaca

upper sequence: GRMZM2G168629_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 4
TATAGCCCTCAAGACAATCATTGCTGAAGTTACTACACCGTCACTTGCTGAAAAGATCTTGCTTTCTCTTGCCCCGCAACTCATCAAGGGTGTCAATACTgtaagctttctactcgaatgccaaatattctacattttcaggcctgtat-ttattcagaccactcaaaatgttcactatgagctggttagtctttgatttc---
||| || || |||||||||||||  |||||||| ||| | ||||||||||||||||| ||| | ||||||||||| || || |||||||| | || | ||||||| | || | |||  | | || | |  || |    || || |  || ||| ||   |  |        |||   |  |  | ||| || |||| | |    
TATTGCTCTGAAGACAATCATTGTGGAAGTTACGACAACATCACTTGCTGAAAAGATTTTGGTGTCTCTTGCCCCACAGCTAATCAAGGGCGCCACTGCTgtaagttctcaattcgtctcctaattgtggtaaaa---catgcttccatattaatcttgcggcgggtgccattcga-accatatagtttgtatttgctattaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934057|gb|CF038869.1|CF038869
EST:     AAAAGATCTTGCTTTCTCTTGCCCCGCAACTCATCAAGGGTGTCAATACT                         GCAAAAAGTGCTGAAATTAAATGCGAATGTCTTGATATATTGGCGGATGTG
genomic: AAAAGATCTTGCTTTCTCTTGCCCCGCAACTCATCAAGGGTGTCAATACTgtaagctttc ... ctgttggcagGCAAAAAGTGCTGAAATTAAATGCGAATGTCTTGATATATTGGCGGATGTG