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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCCTATTAAGCATTGTGCACACTCTTTTAGACCAAAAGAGGCAGGACGATTTGCGCATTGTTGGGTGTGAAACCTTGTTTGATTTTACTGTCAATCAGgtattcctaatggactagatgccaatgcccgttagcaggattaagtttatataggtatgtcccattattggtgatcttgagtctgtctattccag

Basic information

species Zea mays
transcript GRMZM2G168449_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168449_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g10550.1 (Oryza sativa), 5'ss of exon 5
TAGCCTATTAAGCATTGTGCACACTCTTTTAGACCAAAAGAGGCAGGACGATTTGCGCATTGTTGGGTGTGAAACCTTGTTTGATTTTACTGTCAATCAGgtattcctaatg------gactag--atgccaatgcccgttagcaggattaagtttatataggt-atgtcccattattggtgatcttgagtctgtctattccag
|||| ||||||| ||||| |||||||||||||| |||||||||||||| ||| |||||||  | || ||||||||||||||||| ||| | || ||||||||||| |   ||      ||  ||  || ||| | | |   ||||| |||   || | | |  | ||||  | |  ||  || | ||   || |||||||  ||
TAGCTTATTAAGTATTGTACACACTCTTTTAGATCAAAAGAGGCAGGATGATATGCGCATCATAGGATGTGAAACCTTGTTTGACTTTGCAGTTAATCAGgtatttccgttgcctggtgatcagtgataccattcctcaccagcagaattcttttgaaagacatgatgtatc-tggttcatgcttttatttccgtctattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78024142|gb|DV492529.1|DV492529
EST:     ATTTGCGCATTGTTGGGTGTGAAACCTTGTTTGATTTTACTGTCAATCAG                         GTGGATGGTACATATCAGTTCAATTTGGAAGGGCTGGTCCCAAGACTGTGT
genomic: ATTTGCGCATTGTTGGGTGTGAAACCTTGTTTGATTTTACTGTCAATCAGgtattcctaa ... tctattccagGTGGATGGTACATATCAGTTCAATTTGGAAGGGCTGGTCCCAAGACTGTGT
EST: gi|6021841|gb|AW066769.1|AW066769
EST:     ATTTGCGCATTGTTGGGTGTGAAACCTTGTTTGATTTTACTGTCAATCAG                         GTGGATGGTACATATCAGTTCAATTTGGAAGGGCTGGTCCCAAGACTGTGT
genomic: ATTTGCGCATTGTTGGGTGTGAAACCTTGTTTGATTTTACTGTCAATCAGgtattcctaa ... tctattccagGTGGATGGTACATATCAGTTCAATTTGGAAGGGCTGGTCCCAAGACTGTGT