Sequence
atgc intronic sequence ATGC exonic sequenceCGATGATGACAACAAAGGCTCTTCTAGGCTCACTGCCTGTGTTTCATCACAGGTGCTGTCAGTGGATCCTCTGCTATTGGGCACTGTTATTCAAACGGTAgtatgtatgccaatgttttttcttttcttttgacacttgtaatgcatatacaggtcggctgcccccttcgttgctcattttgtgccacggggaagggagg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168412_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g74190.1 (Oryza sativa), 5'ss of exon 5
CGATGATGACAACAAAGGCTCTTCTAGGCTCACTGCCTGTGTTTCATCACAGGTGCTGTCAGTGGATCCTCTGCTATTGGGCACTGTTATTCAAACGGTAgtatgtatgccaatgttttttc----ttttcttttgacacttgtaatgcatatacagg-tcggctgcccccttcgttgctcat----tttgtgccacggggaagggagg
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--------------------GTTGGCTGCCCCTTGCGT-TGCTCATTTTGTGCCACTGGCAAGGGAGGGTTTGCAA---GAAACCTTCATGCACATGAGATTGTTGAGCAGgttgtctctccacaacccacctagtacagcgtttatgtacaaaaaagataaattgtgcttgttcttgcacaacagattaatattctggcgttgcag--
upper sequence: GRMZM2G168412_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g74190.1 (Oryza sativa), 5'ss of exon 4
------------------------------------------------CGATGATGACAACAAAGGCTCTTCTAGGCTCACTGCCTGTGTTTCATCACAGGTGCTGTCAG--TGGATCCTCTGCTATTGGGCACTGTTATTCAAACGGTAgtatgtatgccaatgttttttcttttcttttgacacttgtaatgcatatacaggtcggctgcccccttcgttgctcattttgtgccacggggaagggagg
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ACTTCTCAAGTTGGAGGATAACAGATTGATCGAAACAGTAGGGATCCCTGTCGATGATGACAAAGGCCCGTCAAGACTCACTGCCTGCGTTTCATCACAGgtgctgtgaaattcatacctcggattttggacattaccata-----gtcagagcgcatgc-------ttgttttacagtttgatactagtgctgcag-----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32803194|gb|CD955430.1|CD955430EST: GATCCTCTGCTATTGGGCACTGTTATTCAAACGGTA GTGTTGGCCATCGAGGAGACGTTCAAACACAGGGTGACAAATGTTGTGTTC
genomic: GATCCTCTGCTATTGGGCACTGTTATTCAAACGGTAgtatgtatgc ... gccattgcagGTGTTGGCCATCGAGGAGACGTTCAAACACAGGGTGACAAATGTTGTGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGATGATGACAACAAAGGCTCTTCTAGGCTCACTGCCTGTGTTTCATCACAGGTGCTGTCAGTGGATCCTCTGCTATTGGGCACTGTTATTCAAACGGTAgtatgtatgccaatgttttttcttttcttttgacacttgtaatgcatatacaggtcggctgcccccttcgttgctcattttgtgccacggggaagggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcccc