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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCATGCTTCTCTCCGACGCCGGCCTCCGCGTGCACGTGCTCGGCTGGATCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattcttctgttgccttttggtttcctttgtctgttattagttaaatggtttgtaatcgttcaataaactaactacctgcttgcttgcag

Basic information

species Zea mays
transcript GRMZM2G168365_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168365_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g30910.1 (Oryza sativa), 5'ss of exon 3
CACCATGCTTCTCTCCGACGCCGGCCTCCGCGTGCACGTGCTCGGCTGGATCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgt--ttcattcttctgttgccttttggtttcctttgtctgttattagttaaatggtttgtaatcgttcaataaa------ctaactacctgcttgctt-gcag
|||  |||| ||||||  || ||  |||||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||| ||  | ||||| || ||     |     |   |||  | | | |  |||  |   | ||   |  |  | |     | |     || |       || |  |      || || ||||
CACGCTGCTGCTCTCCCGCGGCGAGCTCCGCGTCCACGTCCTCGGCTGGATCTGCGTCGCCGTCTCGCTCAGCGTCTTCGCCGCTCCCTTGAGCATCATCgtaagctagcaaacgaatgcaatcttgatgtcttgctaactaatcgctcgatcgatcaaccagcagctgatgacaaggttctgatgattgttgtgttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101593|gb|EE187720.2|EE187720
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|149082312|gb|EE171496.2|EE171496
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211098083|gb|FL308906.1|FL308906
EST:     CTGCGTCA-CGTNCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGC
genomic: CTGCGTCAGCGT-CTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGC
EST: gi|211515173|gb|FL354453.1|FL354453
EST:     TCTGCGTCAS-GTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGC
EST: gi|148995998|gb|EE035249.2|EE035249
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211500953|gb|FL349221.1|FL349221
EST:     TCTGCGTCMSSTTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAA
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAA
EST: gi|211378521|gb|FL350955.1|FL350955
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTC
EST: gi|211289713|gb|FL361715.1|FL361715
EST:     CTGCGTCA-CGTCCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: CTGCGTCAGCGTC-TCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211512468|gb|FL332428.1|FL332428
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGATCAAGAGCGTGGAGTT
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTT
EST: gi|50333944|gb|CO529070.1|CO529070
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|149100156|gb|EE186212.2|EE186212
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211342622|gb|FL344344.1|FL344344
EST:     CTGCGTCA-CGTCCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCT
genomic: CTGCGTCAGCGTC-TCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCT
EST: gi|211050329|gb|FL359890.1|FL359890
EST:     CTGCGTCA-CGGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTC
genomic: CTGCGTCAGCG-TCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGG-ACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTC
EST: gi|78088794|gb|DV517187.1|DV517187
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211467660|gb|FL334998.1|FL334998
EST:     CTGCGTCA-CGGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGGACCAA
genomic: CTGCGTCAGCG-TCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGG-ACCAA
EST: gi|211160992|gb|FL363058.1|FL363058
EST:     TCTGCGTCA-CGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCC
EST: gi|211427339|gb|FL330523.1|FL330523
EST:     TCTGCGTCA-CGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGNTTTCATGCCTATCTCGCTCT
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAG-TT-CATGCCTATCTCGCTCT
EST: gi|211160524|gb|FL223270.1|FL223270
EST:     TCTGCGTCAS-GTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCAATGCCTATCTCGCTCTC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCA-TGCCTATCTCGCTCTC
EST: gi|148930741|gb|EC873035.2|EC873035
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211349655|gb|FL335831.1|FL335831
EST:     TCTGCGTCAS-GTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGA
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGA
EST: gi|211160523|gb|FL223269.1|FL223269
EST:     TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211160522|gb|FL223268.1|FL223268
EST:     CTGCGTCA-CGTCCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: CTGCGTCAGCGTC-TCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTCC
EST: gi|211159370|gb|FL361290.1|FL361290
EST:     TCTGCGTCA-CGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATG                         CGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTC
genomic: TCTGCGTCAGCGTCTCGCTCAGCGTCTTCGCCGCGCCGCTCAGCATAATGgtttcattct ... ttgcttgcagCGGCAGGTGATCCGGACCAAGAGCGTGGAGTTCATGCCTATCTCGCTCTC