Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacctccctgtcaaatgtctagttcctgttggcactgagtatattgcttgctcacacctttttcctttatgtaaacag

Basic information

species Zea mays
transcript GRMZM2G168330_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 4
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacctccctgtcaaatgtctagttcctgttggcactgagtatattgcttgctcacacctttttcctttatgtaaacag
|||||| || |||||||||||||||||||| ||||||||||||||||| ||  | |||| ||||||||||||||||||||| ||| |||| | ||||||||||||  | |    | |||| ||  |   |||||||   |   | ||  |  || ||| |||||  | |  | | | | |||||
GTGGGAGAATAGCTCATGGGGCAAGAAGCTAATTGTCCAGAAGAGGAGAGCGTCACTCAATGACTTTGACAGGTTCAAGGTTATGTTGGCCAAGATCAAGgtcagacatcctattctcaattggtttactcctgtttata---actac-tcactagcttacaccaatgttttctgtatgaacag

upper sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G00680.1 (Glycine max), 5'ss of exon 4
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacctccctgtcaaatgtcta-gttcctgttggcactgagtatattgcttgctcacacctttttcctt-tatgtaaacag----------------------------------------------------------------------------------------
 ||||| || || || |||||||  || |||||||| ||||||||||||||  | || | ||||||||| ||||||||| | ||| |||| | |||||||||  |     ||  ||| | |||| ||   |  |  |    |  | | | ||  ||  |       |  |  |  | ||| | |                                                                                          
ATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttgg---tttcattgt-acatgtttatactttttctttttcaaaattttttatttagttgtgtactagtgttagtgtgttacccttctcacagaaaggggtctgttcttttttgttatactatcattttaatttcagaagaagtctaatatacaaaatgtttaatttgtgcag

upper sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G00680.1 (Glycine max), 5'ss of exon 4
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcagg---aacctccctgtcaaa---tgtctagttcctgttggca---ctgagtatattgcttgctcac-acctttttcctttatgtaaacag---------------------------------------------------------------------------------
 ||||| || || || |||||||  || |||||||| ||||||||||||||  | |||| ||||||||| ||||||||| | ||| |||||| |||||||||  |    |  || | |||  |    | | | ||| || ||   |    |   |   ||  |||   || |   ||  |||| |   | | ||                                                                                 
ATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTTGGCAAAGATCAAGgttggtttcattctacatgtttatacttttttcgtttctttttttaaattttgttgatttagttgtgtactagtgttacccttcacacagaaaggggtctgttctatttgttgttatcctataattttaacttcggagacgctgaatctaatatactagtgtttaatttgtgcag

upper sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT2G20450.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacctccctgtcaaatgtctagttcctgttggc--actgagtatattgcttgctcacacctttttcctttatgtaaacag--------------
|||||| || || |||||||| | ||| || ||||| |||||||| || ||||| |||| ||| ||||||||||||||| ||||| |||| |  ||||||||  |    || | |   |     | |  |  | || |   |||     |  |||     || |    ||| |  |   | |   |              
GTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttacttctttgtatccaccaatgttgttttagtcaactctactttgtgcaaatgcagatgagttttcactgcttcatttgccctcactttcggt

upper sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0118g00670.t01 (Vitis vinifera), 5'ss of exon 5
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc------tccctgt---caaatgtctagttcctgttggc-----actgagtatattgcttgctcacacctttttcctttatgtaaacag------------------------------------
|||||| || || || |||||||  ||| ||||||||||||||||||||||  | || | ||||||||| ||||||||| ||||| |||||| ||| |||||  |  |        |||||||       ||| || ||  |     |     ||| | | | |||     ||| || |    ||    || |||  |                                    
GTGGGAGAATAGTTCCTGGGGCAGAAAGTTGATTGTCCAGAAGAGGAGGGCCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATTAAGgtttgttatgatgcaatccctgtgtgttgctgtttaatttttcccatctctctacttaattttttgtggattcagac-tagaaccccactggaaatggcccaatctaatatatttgtttaatatgcatttgcag

upper sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcag---gaacctccctgtcaaatgtctagttcctgttggcactgagtatattgcttgctcacacctttttcc--tttatgtaaacag--------------------------------------------------------------------------
|||||| || ||||| |||||||  ||||||||||| ||||||||||| ||  | || | ||||||||| ||||||||| ||||| |||||| |||||||||  |     |   |      | |||||    | ||| | ||| | |    ||| ||   ||| |||||||| |        ||  ||                                                                           
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcattta----atttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211359619|gb|FK995532.1|FK995532
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGAAGAA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAA
EST: gi|78025604|gb|DV493991.1|DV493991
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211080917|gb|FK995370.1|FK995370
EST:     TGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTTGGCAAGGATCAAG                         AAGGGGTGGTGCTATCAGGCA
genomic: TGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCT-GGCAAGGATCAAGgtcaggaacc ... atgtaaacagA-GGGGTGGTGCTATCAGGCA
EST: gi|211356966|gb|FK995522.1|FK995522
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGAA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAA
EST: gi|211069962|gb|FK995312.1|FK995312
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGAAGAAGGCGTCCAC
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCAC
EST: gi|9255102|gb|BE345570.1|BE345570
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|29130664|gb|CB381368.1|CB381368
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211067220|gb|FK995294.1|FK995294
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGAAGAAGGCGTCCACT
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211210863|gb|FK995469.1|FK995469
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAA
EST: gi|18654747|gb|BM499552.1|BM499552
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|29945946|gb|CB815900.1|CB815900
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|166628050|gb|EG093374.1|EG093374
EST:     CTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCC
genomic: CTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCC
EST: gi|19822655|gb|BQ048679.1|BQ048679
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCNAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|60341766|gb|DN208739.1|DN208739
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|18649028|gb|BM497847.1|BM497847
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|30031553|gb|CB833404.1|CB833404
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|120480700|gb|EH210966.1|EH210966
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211213430|gb|FK995481.1|FK995481
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|113675971|gb|DW831538.1|DW831538
EST:     GTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: GTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|8930379|gb|BE225143.1|BE225143
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAACTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|60395137|gb|DN228006.1|DN228006
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211210869|gb|FK995475.1|FK995475
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGAAGAAGGCGTCCACT
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|4885817|gb|AI676937.1|AI676937
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|5439488|gb|AI820409.1|AI820409
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|67020174|gb|CO448923.1|CO448923
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|18649196|gb|BM498030.1|BM498030
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCCCG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|113641053|gb|DW803994.1|DW803994
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGC
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGC
EST: gi|211083641|gb|FK995375.1|FK995375
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|18649755|gb|BM498574.1|BM498574
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|20506726|gb|BQ279317.1|BQ279317
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|29945948|gb|CB815901.1|CB815901
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGG-GGTGCTATCAGGCAAGAG-TCGCCAAGCTGAAGAAGG-GTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|18166196|gb|BM336035.1|BM336035
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCAAA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|20300077|gb|BQ163020.1|BQ163020
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCCAGCTGAAGAAGGCGTCCCCG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|166692262|gb|EG105253.1|EG105253
EST:     CTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTAGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCAC
genomic: CTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGT-GGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCAC
EST: gi|60338249|gb|DN205222.1|DN205222
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211478439|gb|FL475437.1|FL475437
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211078184|gb|FK995358.1|FK995358
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211208303|gb|FK995460.1|FK995460
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|8665654|gb|BE186470.1|BE186470
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCCCG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|9255101|gb|BE345569.1|BE345569
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCCCG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211075431|gb|FK995330.1|FK995330
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211362275|gb|FK995540.1|FK995540
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|29130747|gb|CB381451.1|CB381451
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211198038|gb|FK995403.1|FK995403
EST:     CTGCTCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|30031552|gb|CB833403.1|CB833403
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|5456090|gb|AI833780.1|AI833780
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211072702|gb|FK995327.1|FK995327
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAG
EST: gi|60358103|gb|DN225076.1|DN225076
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211378851|gb|FL249885.1|FL249885
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|18654746|gb|BM499551.1|BM499551
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211067215|gb|FK995289.1|FK995289
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAG
EST: gi|30052160|gb|AI065449.2|AI065449
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|32851036|gb|CD990717.1|CD990717
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGAAGAAGGCGTCCACT
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|9743082|gb|BE519230.1|BE519230
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211213431|gb|FK995482.1|FK995482
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGAWCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAG
EST: gi|211203138|gb|FK995424.1|FK995424
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCA
EST: gi|211359624|gb|FK995537.1|FK995537
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGA
EST: gi|60393992|gb|DN226862.1|DN226862
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211072704|gb|FK995329.1|FK995329
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGYGGTGCTATCAGGCAAGAGCT
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCT
EST: gi|9743083|gb|BE519231.1|BE519231
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211072698|gb|FK995323.1|FK995323
EST:     TGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCGAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAA
genomic: TGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATC-AAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAA
EST: gi|9028642|gb|BE238682.1|BE238682
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|113652209|gb|DW811318.1|DW811318
EST:     TTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTTCACG
genomic: TTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211198032|gb|FK995397.1|FK995397
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCC
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCC
EST: gi|31997798|gb|CD661777.1|CD661777
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211205720|gb|FK995443.1|FK995443
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTG
EST: gi|9952766|gb|BE639349.1|BE639349
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         A-GGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|33102511|gb|CF062471.1|CF062471
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|60350453|gb|DN217426.1|DN217426
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|15209034|gb|BI430918.1|BI430918
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTC
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTC
EST: gi|211210865|gb|FK995471.1|FK995471
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCTCCAAGCTGAA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAA
EST: gi|5108454|gb|AI740167.1|AI740167
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCCCG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|60338970|gb|DN205943.1|DN205943
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211210864|gb|FK995470.1|FK995470
EST:     CTGCACTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAMGAGCTCTCCAAGCTGAAGAAGGCGT
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGT
EST: gi|211213437|gb|FK995488.1|FK995488
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCMAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCG
EST: gi|149038559|gb|EE155486.2|EE155486
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|60398623|gb|DN231439.1|DN231439
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211078173|gb|FK995347.1|FK995347
EST:     TGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTCGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGT
genomic: TGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCT-GGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGT
EST: gi|60343605|gb|DN210578.1|DN210578
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211075439|gb|FK995338.1|FK995338
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCA
EST: gi|166590384|gb|EG131109.1|EG131109
EST:     GCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAAGGCAAGAGCTCGCCAAGCTGAAGAAGGCG
genomic: GCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCA-GGCAAGAGCTCGCCAAGCTGAAGAAGGCG
EST: gi|211208295|gb|FK995452.1|FK995452
EST:     GCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAAG
genomic: GCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAA-G
EST: gi|5455957|gb|AI833647.1|AI833647
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|15100648|gb|BI396439.1|BI396439
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|29947552|gb|CB816716.1|CB816716
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|60351224|gb|DN218197.1|DN218197
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211213442|gb|FK995493.1|FK995493
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211198025|gb|FK995390.1|FK995390
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCCAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|29577132|gb|CB617244.1|CB617244
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCGCG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|15313730|gb|BI478928.1|BI478928
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACG
EST: gi|211205715|gb|FK995438.1|FK995438
EST:     CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAG                         AGGGGTGGTGCTATCAGGCAAGAGCTCGCCA
genomic: CTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 909

GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACGGCTTAAGTCCCTTTTGGTGGATGGCATGTTAGTTTTTGGTTTCATGTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 933

GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACGGCTTAAGTCCCTTTTGGTGGATGGCATGTTAGTTTTTGGTTTCATGTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 700

GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACGGCTTAAGTCCCTTTTGGTGGATGGCATGTTAGTTTTTGGTTTCATGTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 336

GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacc ... atgtaaacagAGGGGTGGTGCTATCAGGCAAGAGCTCGCCAAGCTGAAGAAGGCGTCCACGGCTTAAGTCCCTTTTGGTGGATGGCATGTTAGTTTTTGGTTTCATGTTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcaggaacctccctgtcaaatgtctagttcctgttggcactgagtatattgcttgctcacacctttttcctttatgtaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG