1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACGGGTAACCATCTGAAAGGGTCACGGCCACTTCTTACATTTTCTACAAATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaattgttttcacatgttatgctgtacctacatgttgctaatcattttttaagatgttgatgaactgccctgatctatccagttatccagatttg...
species | Zea mays |
transcript | GRMZM2G168176_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|148943696|gb|EC888763.2|EC888763
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|76289778|gb|DV029346.1|DV029346
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|76285403|gb|DV024971.1|DV024971
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAAACTTTCCATGACCATEST: gi|71325419|gb|DR799392.1|DR799392
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|71307148|gb|DR789745.1|DR789745
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCCTTTCCATGACCAEST: gi|6827088|gb|AW330731.1|AW330731
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACC-TTTCCATGACCA
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGCAAAGCAAAACCTTTCCATGACCATEST: gi|76283913|gb|DV023481.1|DV023481
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTTCATGACCATEST: gi|78180563|gb|DV550891.1|DV550891
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|18659405|gb|BM500320.1|BM500320
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|32945542|gb|CF050361.1|CF050361
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCAT ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaatt ... acttgtgcagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGGGTAACCATCTGAAAGGGTCACGGCCACTTCTTACATTTTCTACAAATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATTATAACTCATgtatgtaattgttttcacatgttatgctgtacctacatgttgctaatcattttttaagatgttgatgaactgccctgatctatccagttatccagatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA