1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCAGTCGCTCCTGAGGAGCCAGTGCAAGCTCCACCTGTGCCACTTCCTCACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATCgtatgtcacttcttacttgctgtatcattttatttatttgacatcttgcctgatgcatctttaaaactacacttgactgattcatgcag
species | Zea mays |
transcript | GRMZM2G167932_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATC CTAAAAACCGCAAAGGCTCCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTEST: gi|31354051|gb|CD438408.1|CD438408
genomic: ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATCgtatgtcact ... attcatgcagCTAAAAACCGCAAAGG---CTCCTGCATTCCCAGTAGCCCAGCAAGTACCT
EST: ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATC CTAAAAACCGCAAAGGCTCCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTEST: gi|166513160|gb|EG113288.1|EG113288
genomic: ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATCgtatgtcact ... attcatgcagCTAAAAACCGCAAAGG---CTCCTGCATTCCCAGTAGCCCAGCAAGTACCT
EST: CTTATGCTTCCATC CTAAAAACCGCAAAGGCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTGTG
genomic: CTTATGCTTCCATCgtatgtcact ... attcatgcagCTAAAAACCGCAAAGGCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGTCGCTCCTGAGGAGCCAGTGCAAGCTCCACCTGTGCCACTTCCTCACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATCgtatgtcacttcttacttgctgtatcattttatttatttgacatcttgcctgatgcatctttaaaactacacttgactgattcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG