1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTGGTGGATTCCCAAATATTGCCCTCTCACGCCTTCTTCGAAGGCAACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaacttgctgaatgtatggtctataaataccaaaggacttatagactaacttggctttatccccag
species | Zea mays |
transcript | GRMZM2G167886_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACAC---A- TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAAEST: gi|18384883|gb|BM418082.1|BM418082
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA-T-G -G-TGACCATACTGCCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAAEST: gi|76015702|gb|DT942872.1|DT942872
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAG TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAAEST: gi|18384882|gb|BM418081.1|BM418081
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA-T-G -G-TGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTGGATTCCCAAATATTGCCCTCTCACGCCTTCTTCGAAGGCAACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaacttgctgaatgtatggtctataaataccaaaggacttatagactaacttggctttatccccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG