1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATCCAATGGGTCATCTGTTGAGATCCATTTTGATCTCAGGCGAATCATTTCAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttctgtagaatacctgtgcaaaaaaaaggttcattgaattgtttagttcctgctatctacaattgaacttgaacattacttgtttttgccttgt...
species | Zea mays |
transcript | GRMZM2G167728_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|78123012|gb|DV541396.1|DV541396
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|76293670|gb|DV033238.1|DV033238
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|76288285|gb|DV027853.1|DV027853
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|76017739|gb|DT944909.1|DT944909
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|50332870|gb|CO527996.1|CO527996
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTACCCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCC CCTCTTGATGCCAGTGGEST: gi|40334613|gb|CK368683.1|CK368683
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGG
EST: CAAACAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCCCAGATCTAEST: gi|78081365|gb|DV509777.1|DV509777
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|16925257|gb|BM078325.1|BM078325
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|71416955|gb|DR803872.1|DR803872
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|148944391|gb|EC889498.2|EC889498
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTAEST: gi|71432217|gb|DR813267.1|DR813267
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
EST: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCG CCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
genomic: CAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttct ... ttgtttgcagCCTCTTGATGCCAGTGGCTATGCCACAGTGGAGTTTGGTAGCGCAGATCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCAATGGGTCATCTGTTGAGATCCATTTTGATCTCAGGCGAATCATTTCAATCAACTGTAACCTTGTAATAGAGATGCCTCTCCATGCTAGATACCCGgtaagtttctgtagaatacctgtgcaaaaaaaaggttcattgaattgtttagttcctgctatctacaattgaacttgaacattacttgtttttgccttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG