1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTTCCTTTGGGTTTGTGGACTACTATGATCGAAGATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGTgtaagttcagctgttataatactttgaacaacatgaatttaagagattaaattctggtgttatttattatcaaaattcttaaacag
species | Zea mays |
transcript | GRMZM2G166355_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCCGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGT ATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGTACGCAGAGGGAEST: gi|32810117|gb|CD962351.1|CD962351
genomic: GATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGTgtaagttcag ... tcttaaacagATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGTACGCAGAGGGA
EST: GATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGT ATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGTACGCAGAGGGAEST: gi|56462070|gb|CK986368.1|CK986368
genomic: GATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGTgtaagttcag ... tcttaaacagATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGTACGCAGAGGGA
EST: GATCGAAGATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGT ATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGTEST: gi|61118503|gb|DN559464.1|DN559464
genomic: GATCGAAGATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGTgtaagttcag ... tcttaaacagATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGT
EST: GATCGAAGATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGT ATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGTACGCAGAGGGA
genomic: GATCGAAGATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGTgtaagttcag ... tcttaaacagATATGGACAAGCAATCAAGGTGAACTGGGCATATGCAAGTACGCAGAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCTTTGGGTTTGTGGACTACTATGATCGAAGATCTGCTGCTCTAGCAATCATGACCCTTCATGGCCGTCACGTgtaagttcagctgttataatactttgaacaacatgaatttaagagattaaattctggtgttatttattatcaaaattcttaaacag
- - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCTGCT