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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacctgttttggggtgtgctggaaatcttttgttcttttgtcatacttatactactgaaatcctttgttttacctgattttgagttgaactgga...

Basic information

species Zea mays
transcript GRMZM2G166345_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22935750|gb|BU572025.1|BU572025
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAG
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAG
EST: gi|9953234|gb|BE639817.1|BE639817
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGA
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGA
EST: gi|71436812|gb|DR817862.1|DR817862
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAGAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|93012239|gb|EB637759.1|EB637759
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|91874367|gb|EB404324.1|EB404324
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|71320983|gb|DR797210.1|DR797210
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|93280899|gb|EB673163.1|EB673163
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|211165091|gb|FL207339.1|FL207339
EST:     CAACTTTGCAAAAGATAAATGTGGTCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|4753387|gb|AI657292.1|AI657292
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|88756567|gb|DY540708.1|DY540708
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|89248432|gb|DY620218.1|DY620218
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|87155285|gb|DY400074.1|DY400074
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|32913166|gb|CF017978.1|CF017978
EST:     CAACTTTGCAAAAGATAAATGTGGCCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|38229745|gb|CF920058.1|CF920058
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|91873663|gb|EB403620.1|EB403620
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|94477637|gb|EB706595.1|EB706595
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|67022300|gb|CO451049.1|CO451049
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|149110255|gb|EE190312.2|EE190312
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|86469720|gb|DY236090.1|DY236090
EST:     CAACTTTGCAAAAGATAAATGAGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAA
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAA
EST: gi|76286901|gb|DV026469.1|DV026469
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|61118563|gb|DN559524.1|DN559524
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|211165087|gb|FL207335.1|FL207335
EST:     CAACTTTGCAAAAGATAAATGTGGCCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|78112560|gb|DV530954.1|DV530954
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCC
EST: gi|26559559|gb|CA831794.1|CA831794
EST:     CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT                         CATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAA
genomic: CAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCTgtaagttacc ... tcctgttcagCATCCAAGGAAAGCTGATAAAAAAGATGCTGAATCAA