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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGCCCGCTCGAGGGCGCCACCTGCTGCGACGATCACTACAGCTGCTGCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctcggcccatctcgtgatcttcttcagttagctacggagataactgccagtttctttcgtctgatctctaaccggcaaattcgctgcttgacgaacag

Basic information

species Zea mays
transcript GRMZM2G166281_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166281_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S292_39V6.2 (Physcomitrella patens), 5'ss of exon 4
CTGCTGCCCGCTCGAGGGCGCCACCTGCTGCGACGATCACTACAGCTGCTGCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctcggcccatctcgt----gatcttcttcagttagctacggagataactgccagtttctttcgtctgatctctaa--ccggcaaattcgctgcttgacgaacag------------------------------------------------------------
 || ||| |  | ||    || ||||||||||| |||||||||  ||||||||| || || ||||| ||||||||| |       |||   ||||||| |||  | || |  | | ||||       | |  | ||  |     |         |||| |  | ||  |  || || | | |   | |  ||| |     |    |  |||                                                            
ATGTTGCGCCTTGGACTCAGCGACCTGCTGCGATGATCACTACCACTGCTGCCCTCACGAGTACCCAATCTGCAACCTGGATGCAGGACTTTGCCTCAAGgtgca-gcgccactcttctcactcaaaagcaacgtccttgtatcatcacagcttctgctatctgctcgcagctaatgtttcaattctgagaataccaccatcagtgcccagttttgaggtatgcagatgtctaaaagctaattgtgtgagtcgaatgttgtgctactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37424237|gb|CF649850.1|CF649850
EST:     CCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACATGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: CCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|91872962|gb|EB402919.1|EB402919
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|71759415|gb|DR957352.1|DR957352
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|13178432|gb|BG349690.1|BG349690
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|50324182|gb|CO519308.1|CO519308
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|93014347|gb|EB639867.1|EB639867
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|6827823|gb|AW331466.1|AW331466
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|148957685|gb|EC903804.2|EC903804
EST:     GCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACCTGTCACTGTCAGTGAAGGGTACGAAGCGAACCCT
genomic: GCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCA-CTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCT
EST: gi|13178599|gb|BG349857.1|BG349857
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
EST: gi|88750453|gb|DY534594.1|DY534594
EST:     GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATG                         GGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG
genomic: GCCCCCATGACTACCCCATCTGCAACGTCAGGCAGGGAACCTGCCTCATGgtaaatgctc ... tgacgaacagGGCAAGGACAGCCCACTGTCACTGTCAGTGAAGGCTACGAAGCGAACCCTG