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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCGTTGGCGGATGCTGTTACACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggcttgataactctgatgattaaatttcacatgtttctttgtgcttattcgatatcatgttctagacggctaaggcatccagtgaccacgctctttcaacctttcgttctgcag

Basic information

species Zea mays
transcript GRMZM2G165945_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211129016|gb|FL016631.1|FL016631
EST:     CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG                         GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: gi|149078161|gb|EE166908.2|EE166908
EST:     CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG                         GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: gi|78087675|gb|DV516068.1|DV516068
EST:     CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG                         GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: gi|211090437|gb|FL069857.1|FL069857
EST:     CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG                         GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: gi|211129018|gb|FL016633.1|FL016633
EST:     CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG                         GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCGTTGGCGGATGCTGTTACACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggcttgataactctgatgattaaatttcacatgtttctttgtgcttattcgatatcatgttctagacggctaaggcatccagtgaccacgctctttcaacctttcgttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC