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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGACCAGTGTCATACTTGCTCCTCTCTAAGCCTGCCAAGGGTGTGGAGAAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatccacacaaagcagccaacattttttccagcatgattctcgttaattgataatgtgatattttatgaaatgaag

Basic information

species Zea mays
transcript GRMZM2G165747_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211333693|gb|FL127551.1|FL127551
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|31354595|gb|CD438952.1|CD438952
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211335854|gb|FL127557.1|FL127557
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211325033|gb|FL127492.1|FL127492
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331525|gb|FL127534.1|FL127534
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211325031|gb|FL127490.1|FL127490
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211327192|gb|FL127501.1|FL127501
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331526|gb|FL127535.1|FL127535
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211335857|gb|FL127560.1|FL127560
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211325028|gb|FL127487.1|FL127487
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211327185|gb|FL127494.1|FL127494
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211325029|gb|FL127488.1|FL127488
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211325025|gb|FL127484.1|FL127484
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211333686|gb|FL127544.1|FL127544
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211471799|gb|FL068499.1|FL068499
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAANGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331521|gb|FL127530.1|FL127530
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331520|gb|FL127529.1|FL127529
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211327184|gb|FL127493.1|FL127493
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211471802|gb|FL068502.1|FL068502
EST:     AAAACTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGNGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211329358|gb|FL127511.1|FL127511
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGGTGTTTCTGAACTGAAGGCAGCTGGNGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211333687|gb|FL127545.1|FL127545
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211327195|gb|FL127504.1|FL127504
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211325026|gb|FL127485.1|FL127485
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331527|gb|FL127536.1|FL127536
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211329365|gb|FL127518.1|FL127518
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331515|gb|FL127524.1|FL127524
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211333685|gb|FL127543.1|FL127543
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211329369|gb|FL127522.1|FL127522
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211329363|gb|FL127516.1|FL127516
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211333688|gb|FL127546.1|FL127546
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211471803|gb|FL068503.1|FL068503
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331528|gb|FL127537.1|FL127537
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211335858|gb|FL127561.1|FL127561
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211327189|gb|FL127498.1|FL127498
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211333684|gb|FL127542.1|FL127542
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211333681|gb|FL127539.1|FL127539
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211335851|gb|FL127554.1|FL127554
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331523|gb|FL127532.1|FL127532
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211335856|gb|FL127559.1|FL127559
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
EST: gi|211331516|gb|FL127525.1|FL127525
EST:     AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAA                         GGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA
genomic: AAATCTTTCTCTCTTCTTTCGCTTCTTGGCAGCATTCTTCCCATCTACAAgtaagcatcc ... tgaaatgaagGGAGGTTGTTTCTGAACTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGA