1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaacataggcgctcaagtttggacttgctatgagttcgttgctctgtcactatgcgtggtgatgaactctgtaacgttggaagtaattggtttgcccttcttctttttgtttttgcag
species | Zea mays |
transcript | GRMZM2G165535_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|71771666|gb|DR969603.1|DR969603
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|148950412|gb|EC895979.2|EC895979
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|14646044|gb|BI180233.1|BI180233
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|148943663|gb|EC888727.2|EC888727
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|76280415|gb|DV019983.1|DV019983
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|32801826|gb|CD954062.1|CD954062
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGAATATGACTACGTCTTCTCCGAAAACGGCCTGGATGCACACA
genomic: GATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaacataggcgctcaagtttggacttgctatgagttcgttgctctgtcactatgcgtggtgatgaactctgtaacgttggaagtaattggtttgcccttcttctttttgtttttgcag
- - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC