Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctctgggcaccttacatagttgcatatactgtctttacatatatgcattggtcaacctctcctgatatttcattctgagagagaaatgttccac...

Basic information

species Zea mays
transcript GRMZM2G165535_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78118501|gb|DV536885.1|DV536885
EST:     AATGGCCAACTAATTTGAAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: AATGGCCAACTAA-TTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|40334667|gb|CK368737.1|CK368737
EST:     CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|71449147|gb|DR830197.1|DR830197
EST:     CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|74245816|gb|DT653730.1|DT653730
EST:     CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|71299719|gb|DR785870.1|DR785870
EST:     CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|32919710|gb|CF024522.1|CF024522
EST:     CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|14646044|gb|BI180233.1|BI180233
EST:     CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|148947648|gb|EC893128.2|EC893128
EST:     AAATGGGCCAATTAA-TGGAACCCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: AAAT-GGCCAACTAATTGGAA-CCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|71773498|gb|DR971398.1|DR971398
EST:     CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG
EST: gi|32801826|gb|CD954062.1|CD954062
EST:     CCGAAAACGGCCTGGATGCACACAAAAATGGCCAACTAATTGGAACCCAA                         AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGGAATTTATTA
genomic: CCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAAgtaagtctct ... cactctgcagAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGGAATTTATTA