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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacag

Basic information

species Zea mays
transcript GRMZM2G165357_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 5
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgta-------tgctagat------ctctgttaca---------tgagaggtggtatattttcatagtttttcctgatattggtgtttgtg-attgtctgtaacag
|||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |  || ||      ||||||||           | | |         | |||||    | | ||||||||    |   || ||  ||    ||||
ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacag

upper sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 4
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgc-----tagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacag----------------
||||||| ||||   |  |  | || ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||||  |||||||||| |||||  |      ||||       |  || |    ||  || ||  |||  |  |  | | | |     |   | |||   || | |||                
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGgtgggggttcgtagagtctacctttat-atttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgca-cagaagtggctttaggtct

upper sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatg-----ctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacag---------------
||||||| ||||   |  |  | || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||||| |||||  |      |||||     ||  || |    ||  || ||  |||  |  |  | | | |     |   | |||   || |   |               
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttat-atttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc

upper sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgat-tgtctgtaacag
|||| ||||||||  |  |  | || ||||| |  || || || |||||||| ||||| || || |||||||||||  ||||||||||||||||  |   ||     | || ||      |   |  ||   ||| |       | || |      | | || ||| | |  |||
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctca-tatcaccttcatataatcagaatcgttagttactgatctaatatgtttatg-cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32829264|gb|CD968942.1|CD968942
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGT
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGT
EST: gi|149070503|gb|EE158907.2|EE158907
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|211182716|gb|FL410032.1|FL410032
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|32829447|gb|CD969125.1|CD969125
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGT
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGT
EST: gi|149082965|gb|EE172201.2|EE172201
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|60394382|gb|DN227252.1|DN227252
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|149070980|gb|EE159385.2|EE159385
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|32914071|gb|CF018883.1|CF018883
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|71444250|gb|DR825300.1|DR825300
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCGAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|60339871|gb|DN206844.1|DN206844
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG
EST: gi|15100352|gb|BI396143.1|BI396143
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG                         ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTTGGACTTGCAAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctaga ... tctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAG