1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTGTCCAAAAGCACTGAAGTGATGAAAATTGTTAACAATCTAATGAAAGCTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgtgcacttcttatttcttgttcgaagatttgaattatttagtgctgataactgaaactaacattttactgttcttactctag
species | Zea mays |
transcript | GRMZM2G165195_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|76010550|gb|DT937720.1|DT937720
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|91052905|gb|EB163323.1|EB163323
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|91054729|gb|EB165147.1|EB165147
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|211298305|gb|FL473376.1|FL473376
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|148991100|gb|EE032548.2|EE032548
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|71765371|gb|DR963308.1|DR963308
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|211512472|gb|FL332432.1|FL332432
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|32867970|gb|CF007652.1|CF007652
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|211493851|gb|FL175583.1|FL175583
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|71765372|gb|DR963309.1|DR963309
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|211490965|gb|FL175567.1|FL175567
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTAC-ACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAEST: gi|78074982|gb|DV503416.1|DV503416
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGA
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|21331789|gb|BQ487170.1|BQ487170
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|76281952|gb|DV021520.1|DV021520
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|32867969|gb|CF007651.1|CF007651
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCCCGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|76010551|gb|DT937721.1|DT937721
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|211095886|gb|FL432128.1|FL432128
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGMCCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGACEST: gi|76933730|gb|DV173563.1|DV173563
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
EST: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAG GCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
genomic: CTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgt ... cttactctagGCAGGTGTGATGGAAGAGATGGTGAACGAGGCAGTTGATTCAGCTTTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTCCAAAAGCACTGAAGTGATGAAAATTGTTAACAATCTAATGAAAGCTCCAGAGTTGGCTACCACGATGCAAGAATTTAGCAAAGAAATGACCAAGgtaatcacgtgcacttcttatttcttgttcgaagatttgaattatttagtgctgataactgaaactaacattttactgttcttactctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA