1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGATGGCGGTATACCCGCGGGTGCAGAAACTGACAGTTCAGCGAACAACGTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTTgtgagtattaccagttctccatgatcttagagctaataatattttctctcatttgacatttagctcttgcaaattctgcggaatggtttctggccttggctgttgtctgtaacttcttcgttctttctcatgcag
species | Zea mays |
transcript | GRMZM2G164950_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTT AGCCAAAGCAGTAAGTCGAGTCCAGAAGCTAACAGTACCCAAAGTCGGCCAEST: gi|60348961|gb|DN215934.1|DN215934
genomic: GTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTTgtgagtatta ... tctcatgcagAGCCAAAGCAGTAAGTCGAGTCCAGAAGCTAACAGTACCCAAAGTCGGCCA
EST: GTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTT AGCCAAAGCAGTAAGTCGAGTCCAGAAGCTAACAGTACCCAAAGTCGGCCAEST: gi|60348579|gb|DN215552.1|DN215552
genomic: GTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTTgtgagtatta ... tctcatgcagAGCCAAAGCAGTAAGTCGAGTCCAGAAGCTAACAGTACCCAAAGTCGGCCA
EST: GTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTT AGCCAAAGCAGTAAGTCGAGTCCAGAAGCTAACAGTACCCAAAGTCGGCCA
genomic: GTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTTgtgagtatta ... tctcatgcagAGCCAAAGCAGTAAGTCGAGTCCAGAAGCTAACAGTACCCAAAGTCGGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGATGGCGGTATACCCGCGGGTGCAGAAACTGACAGTTCAGCGAACAACGTTGTGGACCAAGAACAAGACAAAACATCCGCTACTGGAAAAGAGCGGTTgtgagtattaccagttctccatgatcttagagctaataatattttctctcatttgacatttagctcttgcaaattctgcggaatggtttctggccttggctgttgtctgtaacttcttcgttctttctcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC