Sequence
atgc intronic sequence ATGC exonic sequenceGGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataattatggaagtaccttatgacctttcttttcctctcgaaatcatgccttagatttttcaattgtattcatgtggtaaact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 4
GGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataattatggaagtaccttatgacctttcttttcctctcgaaatcatgc--cttagatttttcaattgtattcatgtggtaaact
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GGAAATTGAAGAGAAGATTAACAAGATAAAGTGGTGCCAAACAGCAAATGGAGCATTGTTTCTTCTGTCCACAAATGATAAGACAATAAAGTTTTGGAAGgtattattcatcatttagaaatcatagaaatttcttgtaaaccagtattgctaaactgttgcatgcttctttacatatgtatgtgcaactcagtgataat--
upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 4
GGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataattatggaagtaccttatgacctttcttttcctctcgaaatcatgccttagatttttcaattgtattcatgtggtaaact------
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GGAGATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCCTGTTCCTTCTTTCTACAAATGATAAAACGATCAAATTTTGGAAGgtatga---aatgaatgatcacctttagcatgttttcagtgctgtcatttatcaattcattgataaattg---tgcacaagtttgcacttctgaggaactaagttt
upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 4
GGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataattatggaagtaccttatgacctttcttttcctctcgaaat-catgccttagatttttcaattgtattcatgt---ggtaaact
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GGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAGgtatgaa--atgaatgctcacttgtggga-tgctgaatgctattttttttattcaatttatatatgaatgacacacat-ggttacatttctgtcaaaataagtt
upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G20830.1 (Glycine max), 5'ss of exon 4
GGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataattatggaagtaccttatgacctttcttttcctctcgaaatcatgccttagatttttcaattgtattcatgtgg---taaact-
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GGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCCAATGGTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAGgtatgaa--atgaattctcacttgtggga-tgctgaatgctatttttttattcaatttatatatgaatgacacacat-ggttacatttctgtcgaactaagttt
upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 4
GGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataa----ttatggaagtaccttatgacctttcttt-------tcctctcgaaatcatgccttagatttttcaattgtattca---tgtggtaaact-----------------------------------------------------
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GGAAATAGAGGAGAAAATCAATAAGATTAGATGGTGTCAAACAGCTAACAATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAGgtaggaaagagaactattttaaagttttttaaagttggtgattatcatttgtaaacagaatgttctaaggttcatgtttt---cttcatagttggtcacaccttttggtgggcttgttaagtacactttatgtgtctctttgctgttctgctttgagtgttgaacag
upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 4
GGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataattatggaagt----accttatgacctttcttttcctctcgaaatcatgccttagatttttcaattgtattca-tgtggtaaact--------------------------------------------------------------
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GGAAATAGAGGAGAAAATCAATAAGATCAGATGGTGCCAGACAGCAAATGGTGCCCTGTTTCTTCTATCTACGAATGATAAAACCATTAAGTTTTGGAAGgtaggaagggaaaattgtc--ttatgaaactttaaacttcctgatttttaatttgttgac-agattatgctcaacatcaccaactccagtttggtttctttaactactgatataatatatatcctgcacatgctgattacatagctgtcttttcgagaatgaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31356630|gb|CD440987.1|CD440987EST: GCGCATTGTATCTTCTATCCACAAATGACAAAACTATAAAGTTTTGGAAG GTCCAAGAAAAGAAGGTAAAAAAGCTATCTGAGATGAATTTGGACCGTTCA
genomic: GTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatca ... tgatatgtagGTCCAAGAAAAGAAGGTAAAAAAGCTATCTGAGATGAATTTGGACCGTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAATTGAAGAGAAGATTAACCAAATAAAATGGTGTCAAGCAGCAAATGGTGCATTGTATCTTCTATCCACAAATGACAAAACGATAAAGTTTTGGAAGgtaagcatcagcagtagataattatggaagtaccttatgacctttcttttcctctcgaaatcatgccttagatttttcaattgtattcatgtggtaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG