Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCGTTGATCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATCTGGACACTCCGTGGGTTATGgtaatagcctaagcagcagtttatgtcaactattcagttctagcagatcgtcacttctaattgcgaggacggtgaatagtcatgagctcgcggggctaga...

Basic information

species Zea mays
transcript GRMZM2G164175_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 1
GGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCGTTGATCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATCTGGACACTCCGTGGGTTATGgtaatagcctaagcagcagtttatgtcaactattcagttctagcagatcgtcacttctaattgcgaggacggtgaatagtcatgagctcgcggggctaga----
|||||||||||| || || || ||||| |||||||| || |||||||||||| | |||||||  ||  |||| |||||  ||||  | || ||| | |||||||     |       | || | | |||  | |   |         || | | |    |||   |     |   | ||| ||  | |   ||    ||     
GGAGTGGAAGCGTGGTCTTCGAAGTTACCTCCACCCCTTCATCTTTGCTGCTCTCTACAAGATTCTTTCGCTGCTCCACTTGGATTCCCCATGGTTCATGgtaactattt---tttgaattcacgccaaaaaattcttgtgtatttctc-tgaatgaagattagaaatgaagcttagagttataggattctggtttgagtcatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71764472|gb|DR962409.1|DR962409
EST:     CTTTGTACAAGACCCTGGCGCTACTCCATCTGGACACTCCGTGGGTTATG                         GTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTA
genomic: CTTTGTACAAGACCCTGGCGCTACTCCATCTGGACACTCCGTGGGTTATGgtaatagcct ... tttcctgcagGTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTA