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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaactgtgaaacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtcgcgccatgattgtgccagccagtagcagttttgt...

Basic information

species Zea mays
transcript GRMZM2G163473_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g15370.1 (Oryza sativa), 5'ss of exon 4
TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaactgtgaaacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtc--gcgccatgattgtgccagccagtagcagttt-tgt------
|||||||||||| || ||||||||||||||||| ||||||||||||||||  ||||||||||||||  ||||||||||||| ||||| | | ||||||||||||||||||||        ||||||||||||  |||||| || ||||      ||    ||| |   | || ||   ||  |     ||| |   |   |||      
TTTGAAGGAAAGAAGACTCAAGGACCAGATGGAAAAAGACCCAACTGAAGCAATTCGCAAAGCTGTCATGCGCATGCTTCCTCGCAATAGATTGCGTGATgtaagtgaaact--------tcatttctctttgtttctgc-ttggaaatatgatgctaaatttatttggtgctatctatgcactgcttagttgtcttaaatgtaacaca

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g06474.1 (Oryza sativa), 5'ss of exon 4
TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaactgtgaaacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtcg-cgccatgattgtgccagccagtagcagttttgt----
|||||||||||| || ||||||||||||||||| || |||||||| || |||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||   ||  |     ||||    ||    |||   |||||    |  ||     | || || |  | | || | |    |||   |     || | |    
TTTGAAGGAAAGAAGACTCAAGGACCAGATGGAAAAGGACCCAACCGAGGTGATTCGCAAAGCTGTGATGCGCATGCTTCCCCGCAATAGATTGCGTGATgtaagt---accatttgttttcacgagtcagg-attagacattaattcat-tgtctaagtttggttgatgacttgttagatttagctcctgagttttctatatac

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G36450.1 (Glycine max), 5'ss of exon 5
TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaactgtga--aacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtcgcgccatgattgtgccagccagtagcagttttgt-
  | ||| ||||||  || ||||| || ||||  |||||||| |||||||| |||||||||||||| ||||| ||||| ||  | |||||||| ||||||||||||   ||   ||  ||  |  ||| |     ||| ||   |    ||  |||     | |||      |||| |||     |  | |   || |     
CCTCAAGCAAAGGACTCTAAAGGATCAAATGGCCAAAGACCCTACTGAAGTCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtactacctagaccaatgttttttttgggggattttgagct---gaatatggaatttcgttgctagttcatgtttggtttggatatttcaaggtagaat

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G22420.1 (Glycine max), 5'ss of exon 5
TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaactgtgaaacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtcgcgccatgattgtgccagccagtagcagttttgt
  | ||| ||||||  || ||||| || ||||  |||||||| |||||||| |||||||||||||| ||||| ||||| ||  | |||||||| |||||||||||||  ||   ||    |  ||| | |||      | |||   |         |   |||      |  || | ||       | |   |||||| |
CCTCAAGCAAAGGACTCTAAAGGATCAAATGGCCAAAGACCCTACTGAAGTCATTCGCAAAGCTGTTCTGCGTATGCTCCCTAGAAACAAACTACGTGATgtaagtgctacctagaccactgttttgttttttgggtgggattttgagctgaatatggaattttgacttcgttgctagttgtttagaatgagagtttttt

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0171g00250.t01 (Vitis vinifera), 5'ss of exon 4
TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaact-gtgaaacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtcgcgcca-tgattgtgccagccagtagcagttttgt
 ||||| ||||||||  | ||||| ||| | |  || || || || ||||| || |||||||| ||  |||||||||||||  | |||||| ||||||||||||||||   |  ||    ||   || | ||| |       ||| || || |        | |   | |    | | |||   |    | |       |  
CTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGATCCTACAGAAGTCATACGCAAAGCAGTCTTGCGCATGCTTCCAAGAAACAAATTGCGTGATgtaagtgatttttatgccttttttgttatatttaaagggtgcttacaacacttctaatttttatcatgagtggctaaatgtattaatgggaaaggagagt--

upper sequence: GRMZM2G163473_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S347_31V6.1 (Physcomitrella patens), 5'ss of exon 4
TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaactgtgaaacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtcgcgccatgattgtgccagccagtagcagttttgt---
| ||||||| ||||   | ||||| || ||||     ||  ||||||| ||| |||| ||||| || |  |||||||||||||||||||| || || ||||||||||   |     |   |     |       |      |||   ||  ||   |    |  | |     |||  ||     |   | |     |||    
TGTGAAGGAGAGGACTGTTAAGGAACAAATGGTACGCGATTCAACTGAGGTGCTTCGTAAAGCCGTCCACCGCATGCTTCCCCGCAACAAGCTCCGAGATgtaagtgtctcctgttagtgttccaccggaactttcggatgttactgaa--tgaatgttgctaatggtattttgaa-gttttcacggctggagaacttgcaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342857|gb|DN209830.1|DN209830
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60343511|gb|DN210484.1|DN210484
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211068078|gb|FL151284.1|FL151284
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211498775|gb|FL140826.1|FL140826
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60347040|gb|DN214013.1|DN214013
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|148938736|gb|EC883069.2|EC883069
EST:     TGATTCGCANAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|76015937|gb|DT943107.1|DT943107
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60397634|gb|DN230450.1|DN230450
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211068080|gb|FL151286.1|FL151286
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|74241943|gb|DT649857.1|DT649857
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTTTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211068074|gb|FL151280.1|FL151280
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60354692|gb|DN221665.1|DN221665
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|5499452|gb|AI855319.1|AI855319
EST:     GCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: GCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|37361133|gb|CF602422.1|CF602422
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|19822368|gb|BQ048392.1|BQ048392
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|22819382|gb|BU499472.1|BU499472
EST:     GATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: GATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|88752119|gb|DY536260.1|DY536260
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCACCAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|148999745|gb|EE036748.2|EE036748
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|5398715|gb|AI812180.1|AI812180
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211068083|gb|FL151289.1|FL151289
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|9731724|gb|BE510476.1|BE510476
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60348718|gb|DN215691.1|DN215691
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|87156387|gb|DY401176.1|DY401176
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211065316|gb|FL151271.1|FL151271
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCMCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCT
EST: gi|149071926|gb|EE160312.2|EE160312
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|87156393|gb|DY401182.1|DY401182
EST:     GATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: GATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|148973081|gb|EE024144.2|EE024144
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTTTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|78112053|gb|DV530449.1|DV530449
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|19770416|gb|BQ035137.1|BQ035137
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211068084|gb|FL151290.1|FL151290
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211284263|gb|FL053253.1|FL053253
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60349978|gb|DN216951.1|DN216951
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|149083441|gb|EE172763.2|EE172763
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211282461|gb|FL053248.1|FL053248
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|76281753|gb|DV021321.1|DV021321
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|32907178|gb|CF011991.1|CF011991
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60357091|gb|DN224064.1|DN224064
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211065322|gb|FL151277.1|FL151277
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGC
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGC
EST: gi|211068086|gb|FL151292.1|FL151292
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCNGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60344047|gb|DN211020.1|DN211020
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|22713642|gb|BU197415.1|BU197415
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60395778|gb|DN228648.1|DN228648
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|26559331|gb|CA831566.1|CA831566
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211070812|gb|FL151294.1|FL151294
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60342646|gb|DN209619.1|DN209619
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211070811|gb|FL151293.1|FL151293
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|149077053|gb|EE165709.2|EE165709
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTTTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|148973082|gb|EE024145.2|EE024145
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211468041|gb|FL459168.1|FL459168
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|74237945|gb|DT645859.1|DT645859
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211320106|gb|FL441338.1|FL441338
EST:     TGATTCGCAAAGCTGT-STGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|32858018|gb|CD997699.1|CD997699
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|37420605|gb|CF647997.1|CF647997
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211282457|gb|FL053244.1|FL053244
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|78118041|gb|DV536428.1|DV536428
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|60342547|gb|DN209520.1|DN209520
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|78026238|gb|DV494625.1|DV494625
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|37400998|gb|CF637860.1|CF637860
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|211068075|gb|FL151281.1|FL151281
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGA
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGA
EST: gi|149077054|gb|EE165710.2|EE165710
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|56382613|gb|CV985282.1|CV985282
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|76928535|gb|DV171658.1|DV171658
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|78105659|gb|DV524077.1|DV524077
EST:     TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
genomic: TGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT
EST: gi|88747158|gb|DY531299.1|DY531299
EST:     GCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGAT                         GATAGGGATCGCAAGCTGCGGATATTTTTTGGAATTGAGCATCCATTCCAT
genomic: GCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 172

TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCATGACCGCCCTCTTGAAGCTTTTGTGATGCCACCACGGCAAGTACGGGAGA


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 68

TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCATGACCGCCCTCTTGAAGCTTTTGTGATGCCACCACGGCAAGTACGGGAGA


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 70

TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCATGACCGCCCTCTTGAAGCTTTTGTGATGCCACCACGGCAAGTACGGGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 95

TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaa ... ggtcttccagGATAGGGATCGCAAGCTGCGGATATTTTCTGGAATTGAGCATCCATTCCATGACCGCCCTCTTGAAGCTTTTGTGATGCCACCACGGCAAGTACGGGAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAACAAACTGCGTGATgtaagtgaaactgtgaaacttcatttctctttcattctgcattagaaaacctgggcgcgctttgtcgcgccatgattgtgccagccagtagcagttttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagaaaac