1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCTTCTAGTTTCTGGGAGAAGAAAAGAGGCCCTTCAGTGTGCCCAGGGAGGTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATGgtctgtttgactttaagcaaccttacttttgtaatgtattatgttgcttgactttcctgcccagttttcatttccatgttaaattcattgttttttccttgactgttggtacag
species | Zea mays |
transcript | GRMZM2G163277_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATG TTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGGEST: gi|211539107|gb|FL161849.1|FL161849
genomic: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATGgtctgtttga ... gttggtacagTTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGG
EST: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATG TTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGGEST: gi|32795825|gb|CD948061.1|CD948061
genomic: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATGgtctgtttga ... gttggtacagTTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGG
EST: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATG TTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGGEST: gi|32943114|gb|CF047933.1|CF047933
genomic: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATGgtctgtttga ... gttggtacagTTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGG
EST: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATG TTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGG
genomic: GTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATGgtctgtttga ... gttggtacagTTTTATGTGGATACAGTGAAGAAAATGGCTCACTTCCATTTTGTATCGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTAGTTTCTGGGAGAAGAAAAGAGGCCCTTCAGTGTGCCCAGGGAGGTCAACTTTGGGGACCTGCAATCATACTGGCATTGCAGCTCGGTGATATGgtctgtttgactttaagcaaccttacttttgtaatgtattatgttgcttgactttcctgcccagttttcatttccatgttaaattcattgttttttccttgactgttggtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC