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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATAAGGTCCCTTGGTGCCCCCGCTGTGCTGCTGTCTCTGGCCATGCAAGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTGgtaagcacacacaaaaaatctggcaaaaaaaaaaaatccgaagtactagcaaggctttgggatagacctcatccggcattgctaacctaacaacccttttctgttctcag

Basic information

species Zea mays
transcript GRMZM2G163154_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163154_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g11734.1 (Oryza sativa), 5'ss of exon 7
ACGATAAGGTCCCTTGGTGCCCCCGCTGTGCTGCTGTCTCTGGCCATGCAAGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTGgtaagcacacacaaaaaatctggcaaaaa---aaaaaaatccgaagtactagcaaggctttgggatagacctca--tccggcattgctaacctaacaacccttttctgttc---tcag
|| || || || |||||||| ||||| ||  | ||||||||||||||||| || |||||||| || ||||| ||||| |||||||| || || || ||||||||| |||   |   |   || |   |          ||   || |   |  |  |    |    | |  | |  |      |  || || |  | | | |||  ||||    ||||
ACAATCAGATCACTTGGTGCTCCCGCCGTATTACTGTCTCTGGCCATGCAGGGTGTTTTCCGTGGTTTCAAAGACACAAAGACACCATTGTATGCCACTGgtaagaacatctactgatcatgtccttattttggttggatatcaactttgattacagtcaggaagaatatttgaagtttaatgtgcctgacattgctaacgtttcttgtttctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438977|gb|DR820027.1|DR820027
EST:     AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTG                         TGGTTGGCGACGCGGCGAACATCATACTGGACCCGATTTTGATGTTTGTTT
genomic: AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTGgtaagcacac ... ctgttctcagTGGTTGGCGACGCGGCGAACATCATACTGGACCCGATTTTGATGTTTGTTT
EST: gi|211301578|gb|FK975059.1|FK975059
EST:     AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTG                         TGGTTGGCGACGCGGCGAACATCATACTGGACCCGATTTTGATGTTTGTTT
genomic: AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTGgtaagcacac ... ctgttctcagTGGTTGGCGACGCGGCGAACATCATACTGGACCCGATTTTGATGTTTGTTT
EST: gi|211145798|gb|FL386480.1|FL386480
EST:     AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTG                         TGGTTGGCGACGCGGYGAACATMATACTGGACCCGATTTTGATGTTTGTTT
genomic: AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTGgtaagcacac ... ctgttctcagTGGTTGGCGACGCGGCGAACATCATACTGGACCCGATTTTGATGTTTGTTT
EST: gi|211303721|gb|FK975067.1|FK975067
EST:     AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTG                         TGGGTGGCGACGC
genomic: AGGGGTTTTCCGGGGGTTCAAGGACACCAAGACACCGTTATACGCTACTGgtaagcacac ... ctgttctcagTGGTTGGCGACGC
EST: gi|211392615|gb|FL390675.1|FL390675
EST:     AAGACACCGTTATACGCTACTG                         TGGTTGGCGACGCGGCGAACATCATACTGGACCCGATTTTGATGTTTGTTT
genomic: AAGACACCGTTATACGCTACTGgtaagcacac ... ctgttctcagTGGTTGGCGACGCGGCGAACATCATACTGGACCCGATTTTGATGTTTGTTT