Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttggccaaatatataatcttattttaatatctgatgttgcattggtttggtatttctgacggttctttttgttcatcag

Basic information

species Zea mays
transcript GRMZM2G163081_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 5
CCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttggccaaatatataatcttattttaatat-ctgatgtt-gcattggtttggtatttctgacggttctttttgttcatcag
| || ||||||||| | || ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| || |        |||| | | ||   |  |||| || ||| |     || ||| |   ||   | |  |  ||   ||  | ||
CTTATTGCACTGGCTTGCTTTTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatacaatccttataaattttttactctatatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttag

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 5
CCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgta-aaatttggccaaatatataatcttattttaatatctgatgttgcattggtttggtatttctgacggttctttttgttcatcag
| |||||||||||| | ||  ||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||| |   |     |||||| || ||    ||| || |  |||  |||| | |   ||   | |  |  ||   ||  ||||
CTTACTGCACTGGCTTGCTTCTGGCTCGTCGTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAGgtacaaatataatc---cttataatttttttactctatatgctcatgc--tggtcttgatcttgatatgtatgattcctttggtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050472|gb|EB160890.1|EB160890
EST:     GGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|26559987|gb|CA832222.1|CA832222
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|5917501|gb|AW054304.1|AW054304
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|67038759|gb|CO465014.1|CO465014
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|24773980|gb|CA409234.1|CA409234
EST:     TGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: TGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31356600|gb|CD440957.1|CD440957
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31612123|gb|CD568745.1|CD568745
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|26557726|gb|CA829961.1|CA829961
EST:     GTGTGCTCAAGATCCGTGGCTTGGATCAGGAGCACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGTCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60342387|gb|DN209360.1|DN209360
EST:     ATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: ATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31357768|gb|CD442125.1|CD442125
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGGCGGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|24773952|gb|CA409206.1|CA409206
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60399132|gb|DN231946.1|DN231946
EST:     ATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: ATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|24773998|gb|CA409252.1|CA409252
EST:     AAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: AAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60341012|gb|DN207985.1|DN207985
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60400221|gb|DN233028.1|DN233028
EST:     GTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31357392|gb|CD441749.1|CD441749
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|32799227|gb|CD951463.1|CD951463
EST:     GATCCGTGGTTTGGATAAGGAGTATGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCATTC
genomic: GATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31360177|gb|CD444534.1|CD444534
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTGGTCTGTTGAGCCAGGTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|32804182|gb|CD956418.1|CD956418
EST:     GATCCGTGGTTTGGATAAGGAGTATGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCATTC
genomic: GATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60351619|gb|DN218592.1|DN218592
EST:     AGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: AGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60347383|gb|DN214356.1|DN214356
EST:     GAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60398359|gb|DN231175.1|DN231175
EST:     GGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|6012680|gb|AW062117.1|AW062117
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTAAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|32929950|gb|CF034762.1|CF034762
EST:     GTGTGCTAAAGATCCGTGGTTTGGATAAGGAGTATGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCATTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31352906|gb|CD437263.1|CD437263
EST:     CAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: CAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|60341797|gb|DN208770.1|DN208770
EST:     TCCGTGG-TTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: TCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31352489|gb|CD436846.1|CD436846
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|67042510|gb|CO468765.1|CO468765
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|31441038|gb|CD510469.1|CD510469
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|211413275|gb|FL046453.1|FL046453
EST:     GTGTGCTAAAGATCCGTGGTTTGGATAAGGAGTATGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCATTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
EST: gi|67011087|gb|CO439836.1|CO439836
EST:     GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC
genomic: GTGTGCTCAAGATCCGTGGTTTGGATCAGGAGTACGAGGGCAATGTTGAGgtaaaatttg ... tgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTC