1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAGgtaactataatcagatcgagtatttgtaatcatatattactttctaaaacgtcttagataaaatatatatttgtttaactttaaattttggaaaattgga...
species | Zea mays |
transcript | GRMZM2G162461_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAG GAATTCGAATTCGAAGAAGCTGANTA-GGTGGCAGAATGCTACCCCTCA-GEST: gi|78091381|gb|DV519755.1|DV519755
genomic: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAGgtaactataa ... gcaatcttagGAATTCGAATTCGAAGAAGCTGA-TAAGGTGGCAGAATGCTACCC-TCAAG
EST: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAG GAATTCGAATTCGAAGAAGCTGATAAGGTGGCAGAATGCTACCCTCAAGGTEST: gi|6695982|gb|AW289090.1|AW289090
genomic: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAGgtaactataa ... gcaatcttagGAATTCGAATTCGAAGAAGCTGATAAGGTGGCAGAATGCTACCCTCAAGGT
EST: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAG GAATTCGAATTCGAAGAAGCTGATAAGGTGGCAGAATGCTACCCTCAAGGTEST: gi|21390198|gb|BQ528247.1|BQ528247
genomic: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAGgtaactataa ... gcaatcttagGAATTCGAATTCGAAGAAGCTGATAAGGTGGCAGAATGCTACCCTCAAGGT
EST: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAG GAATTCGAATTCGAAGAAGCTGATAAG
genomic: CTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAGgtaactataa ... gcaatcttagGAATTCGAATTCGAAGAAGCTGATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCTGATATGCTGAAGTGGAGAAAGGAGTTCGGTGCAGATACCATTCTCGAGgtaactataatcagatcgagtatttgtaatcatatattactttctaaaacgtcttagataaaatatatatttgtttaactttaaattttggaaaattgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agataaaa